PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g01470
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 241aa    MW: 27280.8 Da    PI: 10.4296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g01470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.1e-131502301496
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                   +++p +fa+  g+   + k+++l +e+g++W++  i   ++ r+++++GW eF   n++  g ++ Fkl++   +++ v++v
  CA02g01470 150 IFMTIPLSFAKGTGMT--NMKKMRLVNEKGNEWKLVDI-VHTRYRVLIKGGWAEFRTRNKIANGQTCRFKLIKGnGCGNNVLQV 230
                 4589******999877..5569************8874.4455579************************99655888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.885168IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-101170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-81268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-14133220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-14134232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.179137234IPR003340B3 DNA binding domain
CDDcd100171.02E-7138223No hitNo description
SMARTSM010192.1E-4140236IPR003340B3 DNA binding domain
PfamPF023623.9E-11150230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLAKTCLLKT NAVGLIWEAK IVRENSNYFI CDGDWPQFVV HHKLELGDIL IFFLIDKSTF  60
QVLPYNQKSC KSFSGKGVFQ ELSSSSAEEH DVGIARKLKK IKMEPKESSE EEKAEGGNGK  120
KGPKKNRFSV VNLNSKDPYF EMVVRKTHSI FMTIPLSFAK GTGMTNMKKM RLVNEKGNEW  180
KLVDIVHTRY RVLIKGGWAE FRTRNKIANG QTCRFKLIKG NGCGNNVLQV QKIPKPHSLQ  240
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561891.11e-178PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A1U8FRS91e-176A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRINGSolyc02g065340.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-09B3 family protein