PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g00850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 195aa MW: 23077.4 Da PI: 9.6562 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.7 | 6.3e-18 | 10 | 83 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt qe+++L+ea++ +eer r gk + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ CA02g00850 10 WTIQETMVLVEAKKMDEERRMRrqeGKPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRVV 83 *************977776654233678899**************************************99873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.131 | 2 | 69 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.7E-12 | 9 | 80 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MFRDYRKGNW TIQETMVLVE AKKMDEERRM RRQEGKPTEL RWKWVEDYCW RNGCLRSQNQ 60 CNDKWDNLMR DFKKVREYER RVVEAGGEEV VKSYWNIEKN ERKEKNLPTN MLPQIYEALV 120 EVVDKKSQRM LLPSLPPTLQ QQSTQPQITS LPFPPLPTTT TVAPTDYTTH VPFPTVGTLY 180 SPNFSKKKHY LTSS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561977.1 | 1e-119 | PREDICTED: trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1U8FS10 | 1e-117 | A0A1U8FS10_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Y293 | 1e-117 | A0A2G2Y293_CAPAN; trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2G3D454 | 1e-117 | A0A2G3D454_CAPCH; Uncharacterized protein | ||||
STRING | Solyc02g069390.1.1 | 1e-100 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4821 | 22 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 8e-50 | Trihelix family protein |