PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g32370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 273aa    MW: 31813.6 Da    PI: 10.0503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g32370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.8e-151495599
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +p  f++  +g+   +++ ++  + g+ W vk++ +       +++GW  Fv++++L+ gD++vF+++g++ef   v++f++
  CA01g32370 14 I--QPGFKNG-LKIPVGFLKYVKGQ--DQIEHVVLRSGGKNWLVKVKCW------RFEAGWAAFVEQHDLQLGDMLVFRYEGNMEF--EVSIFDS 95
                4..4556665.********555766..5578888899*********222......3899***********************9999..9999986 PP
2B354.81.7e-17160240588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 ++++++ +++ l lp +fa ++g+ + ++  l+++de+ r W++kl  + +++r+++t+GW +F  +n Lk gD ++F+++ + 
  CA01g32370 160 TIREYNISHHYLGLPQQFAYANGLTN-KKCSLIIRDEQQRLWNLKL--SSCKSRTYITGGWHKFSADNCLKKGDRIMFEVVTNG 240
                 678999****************8775.4458***************..999999*************************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-21397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-205102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28796IPR003340B3 DNA binding domain
CDDcd100171.15E-15894No hitNo description
SMARTSM010192.3E-131096IPR003340B3 DNA binding domain
PfamPF023629.8E-121895IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-20153248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19154252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816156250IPR003340B3 DNA binding domain
SMARTSM010191.3E-10157250IPR003340B3 DNA binding domain
PfamPF023625.9E-15160242IPR003340B3 DNA binding domain
CDDcd100171.41E-12166235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQPGFKN GLKIPVGFLK YVKGQDQIEH VVLRSGGKNW LVKVKCWRFE  60
AGWAAFVEQH DLQLGDMLVF RYEGNMEFEV SIFDSTHCDR EYVEYLHEDQ GGSWRDEEIS  120
KKFKFKGRPR LRIKMSKKAS SHVEAAAHHK SFGHSHFECT IREYNISHHY LGLPQQFAYA  180
NGLTNKKCSL IIRDEQQRLW NLKLSSCKSR TYITGGWHKF SADNCLKKGD RIMFEVVTNG  240
ETPIWKFQVT NRETPLQKFQ GKFSHLTSLL FL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555130.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A2G3ANH30.0A0A2G3ANH3_CAPAN; Uncharacterized protein
STRINGSolyc08g006490.1.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-30B3 family protein