PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 353aa    MW: 39798.9 Da    PI: 6.6275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13173219455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  CA01g31490 173 DHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 219
                 699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.428169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17173231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-13174223No hitNo description
SMARTSM003536.1E-15175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEYYGFNQQW PIGSFDELSA ISIAASFGEN TLHDSFIYHD QPILGHKRPI ELSQTVEERP  60
LKNPKTSHSW NNNNNSYHEN DQMLSSQSVA SPNYSHLINS NNLSNQQDVT MKPKEETTLS  120
SSSITFAADH HNNMVCHQDS FANQNYMFKA NNSCQGANKS VSTNNGKLTH AQDHIIAERK  180
RREKLSQRFI ALSALIPGLK KMDKASVLGD AIKYLKQLQE RVKTLEEQTK KKSVESVVFM  240
KKYELYGDGE NSSSDENNSI GTQQMDEALP EIEARICEKD VLIRIHCEKR KGIVEKTVTE  300
IEKLHLSIIN TCALTFGTCA LDITIIAQMD EEFAMTVKDL VKNLHTALKM VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13173222857Transcription factor MYC2
5gnj_B2e-13173222857Transcription factor MYC2
5gnj_E2e-13173222857Transcription factor MYC2
5gnj_F2e-13173222857Transcription factor MYC2
5gnj_G2e-13173222857Transcription factor MYC2
5gnj_I2e-13173222857Transcription factor MYC2
5gnj_M2e-13173222857Transcription factor MYC2
5gnj_N2e-13173222857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
2178183RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389281e-147AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence.
GenBankHG9755131e-147HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582322.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0726e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1U8HFX60.0A0A1U8HFX6_CAPAN; Transcription factor bHLH18
TrEMBLA0A2G2Y3B10.0A0A2G2Y3B1_CAPAN; transcription factor bHLH18-like
STRINGPGSC0003DMT4000130740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-61bHLH family protein