PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g30930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 23600.3 Da PI: 10.6768 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++LC++e+ +i+fs+ k++ + CA01g30930 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIVIIVFSPGHKVFSF 63 6678999********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.965 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-28 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-25 | 8 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-15 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-22 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-15 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-15 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MARKTSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIV IIVFSPGHKV 60 FSFGHPNVES IINRFLTRNP TSSSSTTCQL VEAHRNANVR ELNTQLTGIL NQLEFEKKRE 120 VEIEKIKKAK IGKNWWEGPV NELGLGELEQ LKLGMEDLKK NVTKQMQKII FEASNTPAFF 180 LGGSSSNRGQ VDAKNIKGLG LSMATNGPTS FP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 9e-17 | 8 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 1e-16 | 8 | 93 | 2 | 87 | MEF2C |
5f28_B | 1e-16 | 8 | 93 | 2 | 87 | MEF2C |
5f28_C | 1e-16 | 8 | 93 | 2 | 87 | MEF2C |
5f28_D | 1e-16 | 8 | 93 | 2 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581988.1 | 1e-154 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016581993.1 | 1e-154 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 5e-66 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8HL60 | 1e-152 | A0A1U8HL60_CAPAN; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8HL64 | 1e-152 | A0A1U8HL64_CAPAN; Agamous-like MADS-box protein AGL62 | ||||
STRING | Solyc01g106720.1.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-54 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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