PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g30040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 194aa    MW: 20914.3 Da    PI: 10.455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g30040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.52.2e-21104166163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN aL+ e+++++  ++ l +++
  CA01g30040 104 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRAEVLKEENAALRAEVNRIRSDYEHLLAQN 166
                 89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165961.0E-17272No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-1997164No hitNo description
PfamPF001707.5E-20104166IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-22104168IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.714106169IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-11107163No hitNo description
CDDcd147023.38E-20109159No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MNSGGRQDSA DTSQNGNAAH GSQNGGTAAT HSTINQTMAI VSAPGAGGIT GPATNLNIGM  60
DYWGAATSSP IPAMHGRVPV SVAGGLVTAG SRDSVQSQMW IQDERELKRQ KRKQSNRESA  120
RRSRLRKQAE CDELAQRAEV LKEENAALRA EVNRIRSDYE HLLAQNASLK VFLSTLLQFT  180
KIDQKYKLRT VHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRSRLRK
2120127RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109391e-115AP010939.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0175O15, complete sequence.
GenBankHG9754471e-115HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-115HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550568.11e-120PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_016550573.11e-120PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_016550578.11e-120PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_016550584.11e-120PREDICTED: bZIP transcription factor 16 isoform X1
SwissprotQ501B23e-63BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8ETU91e-119A0A1U8ETU9_CAPAN; Uncharacterized protein
TrEMBLA0A2G3ANM11e-119A0A2G3ANM1_CAPAN; bZIP transcription factor 16 isoform X1
STRINGPGSC0003DMT4000475221e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-61basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]