PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 418aa    MW: 48310.9 Da    PI: 9.4844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-1534122698
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++++  ++++l +p  fa+e+g+   ++ t+t++de+ r W +kl    + g++++++GW + + an L egD v++++ + +++e+ +k++ 
  CA01g29790  34 ITPSCISKCLLHVPILFARENGLRD-RKYTVTIRDEQQRPWVFKL--YTTAGSTFIAGGWGKLCAANFLMEGDHVMIEMFS-KGEEPIFKIYG 122
                 6889999**************9996.558****************..9999999************************765.88999999976 PP
2B350.24.7e-16175255589
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 +++++ l+++ +++pk+fa+e+ +   ++ +++++d + rsW++++    + + +++++GW eF+  n LkegD ++F+ +++ e
  CA01g29790 175 TIKPYCLSKHFVCIPKQFAQENRLYD-RKWEIIVRD-EQRSWTFNV--YTCNKITYFGRGWHEFCLTNCLKEGDRLMFEIVSNGE 255
                 5789999***************6664.5579**999.679******..77777899***********************877543 PP
3B344.52.8e-14321407595
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +++++ ++  l+lp +fa+++g+    + ++++ de+ rsW+v +   + ++  + +++GW +F k+ng+++gD+  F+l++ +++ +vv+
  CA01g29790 321 IIKPYAIRNPVLYLPMDFAKSNGLMD--KHEMIIVDEKRRSWSVWI--GRIDEFhFGIKRGWTQFRKENGVQVGDTYRFELTN-NGTIPVVH 407
                 46789999999***********7774..348999************..7777776889**********************976.55556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1626118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1426114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-1428121No hitNo description
PROSITE profilePS5086311.26529124IPR003340B3 DNA binding domain
SMARTSM010193.4E-1030124IPR003340B3 DNA binding domain
PfamPF023623.4E-1333122IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-19167262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-19168262IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-12171265IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055171264IPR003340B3 DNA binding domain
PfamPF023625.3E-14175259IPR003340B3 DNA binding domain
CDDcd100171.12E-11176262No hitNo description
Gene3DG3DSA:2.40.330.106.3E-17311408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18314409IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.155317411IPR003340B3 DNA binding domain
SMARTSM010199.9E-15318412IPR003340B3 DNA binding domain
PfamPF023621.2E-12322408IPR003340B3 DNA binding domain
CDDcd100171.46E-13332410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEKPKPNVMS SHKDFPDVEP KDMPRGRPRF IYTITPSCIS KCLLHVPILF ARENGLRDRK  60
YTVTIRDEQQ RPWVFKLYTT AGSTFIAGGW GKLCAANFLM EGDHVMIEMF SKGEEPIFKI  120
YGKANASLQP EEKKPTLDAI TQGKPKPKIK TSGKTFSNVE AVKDANLSHS HFICTIKPYC  180
LSKHFVCIPK QFAQENRLYD RKWEIIVRDE QRSWTFNVYT CNKITYFGRG WHEFCLTNCL  240
KEGDRLMFEI VSNGELPIFR FHGKFLICKP LPEFKKEKLD AERMSDKPIT DLSLKTSGTF  300
NLKSQVAAST SADANLHFIS IIKPYAIRNP VLYLPMDFAK SNGLMDKHEM IIVDEKRRSW  360
SVWIGRIDEF HFGIKRGWTQ FRKENGVQVG DTYRFELTNN GTIPVVHFHC EYFFISL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548731.11e-164PREDICTED: B3 domain-containing protein REM10-like isoform X4
TrEMBLA0A2G3ANK21e-179A0A2G3ANK2_CAPAN; Uncharacterized protein
STRINGSolyc08g006210.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.15e-33B3 family protein