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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g29780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 182aa MW: 21486.1 Da PI: 4.6136 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.1 | 4.2e-15 | 69 | 154 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +++ + l++g +++p +fa ++ + +k + +++ ++ rsW+++l ++ + ++++GW+ F +n LkegD ++F+ + + ++ CA01g29780 69 TIRQYCLSKGFMWIPQHFAFANgliNRNKMFG-LIIIDERQTRSWNLTL--HSCKTQAYIADGWRTFSADNCLKEGDRIIFEIVAKgET 154 56789999***********9**5443333333.455556888*******..999999*************************8765233 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-15 | 63 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 64 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.308 | 65 | 165 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-6 | 66 | 162 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-12 | 69 | 153 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.04E-9 | 73 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEFDVSIFDS THCDTKYAEY MQILEEKDKK VEDKNEDDEV VEDENDEEDE DDEAYTHDKP 60 FGQSHFEFTI RQYCLSKGFM WIPQHFAFAN GLINRNKMFG LIIIDERQTR SWNLTLHSCK 120 TQAYIADGWR TFSADNCLKE GDRIIFEIVA KGETQIWKFQ VVNNAKKLMR KFQGKFLMLY 180 S* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557431.1 | 4e-76 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | A0A1U8FDW5 | 9e-75 | A0A1U8FDW5_CAPAN; B3 domain-containing protein REM17-like | ||||
STRING | PGSC0003DMT400094151 | 8e-57 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 1e-10 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |