PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g29760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 212aa MW: 24470.8 Da PI: 6.8768 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.4e-13 | 4 | 75 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f+++ +g+ e+ + ++g++ vkl ++++ l++GW++F+++++L+ gD +vF++dg++ef v++f+ CA01g29760 4 IPVGFLKHLEGPG-EKERAAVLKRDGKKCLVKL--NGQK----LEEGWEQFAEEHDLQLGDLLVFRHDGNMEF--DVSIFN 75 9999**6666554.4457888999*********..8888....*************************99999..888875 PP | |||||||
2 | B3 | 54.2 | 2.7e-17 | 122 | 206 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++ ++l++g l++p+kfa+++g+++ ++ l+++de+ rsW++++ + +++++++ W eF an++k+gD ++F+++++ ++++v CA01g29760 122 TIKQYSLRNGYLRIPNKFAKANGLIN-KDCGLIIRDERQRSWNLRI--YTSCSQVYMGGRWGEFRAANDIKAGDQIMFEVVSN-GEQPV 206 578999****************7774.4557***************..88888999***********************8875.33344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.434 | 1 | 77 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-5 | 1 | 77 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-14 | 3 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-15 | 3 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-10 | 4 | 74 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.34E-14 | 4 | 75 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-18 | 116 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-9 | 118 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 118 | 212 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 118 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-15 | 121 | 206 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.19E-14 | 128 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MQKIPVGFLK HLEGPGEKER AAVLKRDGKK CLVKLNGQKL EEGWEQFAEE HDLQLGDLLV 60 FRHDGNMEFD VSIFNLSHYD REYAEYLLEE EEGHTIEATS KIFESKEAAT HNPIGRSQFI 120 CTIKQYSLRN GYLRIPNKFA KANGLINKDC GLIIRDERQR SWNLRIYTSC SQVYMGGRWG 180 EFRAANDIKA GDQIMFEVVS NGEQPVWKFH GK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 4e-94 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549309.1 | 1e-137 | PREDICTED: putative B3 domain-containing protein REM15 isoform X5 | ||||
Refseq | XP_016549314.1 | 1e-137 | PREDICTED: B3 domain-containing protein REM14-like isoform X6 | ||||
Refseq | XP_016549320.1 | 1e-137 | PREDICTED: B3 domain-containing protein REM14-like isoform X7 | ||||
TrEMBL | A0A2G3ANJ4 | 1e-138 | A0A2G3ANJ4_CAPAN; Uncharacterized protein | ||||
STRING | XP_009612433.1 | 1e-102 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-26 | B3 family protein |