PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g28310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 388aa    MW: 44448.1 Da    PI: 8.7113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g28310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1616951099
                HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 + ++ l++p +f+ ++ +g    +++ ++  + g+sW vk+  ++++    +++GW  Fv++++L+ gD ++F+++g++ef   v++f++
  CA01g28310 16 KGFKHGLTIPTDFL-KYlKGR--DQIEHVVLRSGGKSWLVKV--KGCR----FKAGWAAFVEEHDLQLGDLLIFRHEGDMEF--EVSIFDS 95
                445566********.664555..5678888899*********..6666....9***********************999999..9999986 PP
2B359.94.5e-19242328595
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ++++ l+++ l+lpk+fa+++g++ ++   l++ de+ rsW+++l  + +  + ++++GW+eF+ +n++k+gD + F+++  +++++ +k
  CA01g28310 242 IVKPYCLTRNYLYLPKRFARANGLIDKK-CGLVIGDERHRSWNLRL--DTNNAGLYIGEGWREFCVDNDMKVGDCIKFEVVT-NGEKPILK 328
                 5789999***************776543.469**************..99999**************************876.55556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-21398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-20498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.661796IPR003340B3 DNA binding domain
CDDcd100172.07E-15894No hitNo description
SMARTSM010193.2E-131096IPR003340B3 DNA binding domain
PfamPF023622.1E-121695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-6118158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-8118158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.782124161IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-19236330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19237330IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.535238332IPR003340B3 DNA binding domain
SMARTSM010196.4E-18239333IPR003340B3 DNA binding domain
PfamPF023624.0E-17242329IPR003340B3 DNA binding domain
CDDcd100172.71E-14244330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKIPPKKPHF IKPIQKGFKH GLTIPTDFLK YLKGRDQIEH VVLRSGGKSW LVKVKGCRFK  60
AGWAAFVEEH DLQLGDLLIF RHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GCDNVEETSK  120
NFKFKGGWSE FRLANDLKEG DCMMFEVVAN GEKPIWKFHG KKKKGQSVGG PSFALSNSAC  180
ASSAPARNQA YSWKFEVKDK GSLESDRDAD KPNPNIVSTR KAFPNKESAT HNYFGKSHFV  240
CIVKPYCLTR NYLYLPKRFA RANGLIDKKC GLVIGDERHR SWNLRLDTNN AGLYIGEGWR  300
EFCVDNDMKV GDCIKFEVVT NGEKPILKFH GKFSHLSNLL FPQHYFFLVC TLYKCMYCCV  360
WLFETVKNVL HKQLAFSKIY PANEDVL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548815.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X1
TrEMBLA0A2G3D7460.0A0A2G3D746_CAPCH; Uncharacterized protein
STRINGXP_009766332.13e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.19e-30B3 family protein