PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g28300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 20133.6 Da PI: 4.0222 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.8 | 2.3e-14 | 2 | 73 | 18 | 99 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f+ ++ +g +++ ++ + g++W vk+ ++++ l++GW++F+++++L+ gD+++F+++g+++f v++f++ CA01g28300 2 IPIGFL-KYlKGH--DHIEHVVLKRAGNKWLVKM--NGRR----LEDGWEKFAEEHDLRLGDMLIFRHEGDMDF--DVSIFDS 73 677777.453444..4567899999*********..8888....******************************..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.535 | 1 | 74 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.61E-16 | 2 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-16 | 2 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.22E-12 | 2 | 72 | No hit | No description |
Pfam | PF02362 | 1.9E-10 | 2 | 73 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-5 | 6 | 74 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
KIPIGFLKYL KGHDHIEHVV LKRAGNKWLV KMNGRRLEDG WEKFAEEHDL RLGDMLIFRH 60 EGDMDFDVSI FDSTHCDTEY AEYMQIQKEK EKEVEDENEN EDDEVVEDEN DYEDDDDGEE 120 EDENENENDD AEEERGDDEC EEAATHDRPF GRSHFEFTIR QYCLSRGFM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557431.1 | 1e-116 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | A0A1U8FDW5 | 1e-114 | A0A1U8FDW5_CAPAN; B3 domain-containing protein REM17-like | ||||
STRING | XP_009801953.1 | 1e-49 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-17 | B3 family protein |