PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g25720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 490aa    MW: 51115.3 Da    PI: 8.2556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g25720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-115276327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C +++rtG+C yG+rC+F+H++
  CA01g25720 52 EPDCIYYLRTGFCGYGGRCRFNHPR 76
                799********************96 PP
2zf-CCCH37.92.9e-1297122227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C++++rtG Ck+G++Ck++H++
  CA01g25720  97 GQPVCQYYMRTGMCKFGASCKYHHPR 122
                 5789********************96 PP
3zf-CCCH35.81.3e-11143168227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++ +tG+Ck+G +CkF+H++
  CA01g25720 143 GEKECSYYVKTGQCKFGVTCKFNHPQ 168
                 7899********************97 PP
4zf-CCCH35.61.6e-11316339427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  +C++++++G CkyG++C+++H+p
  CA01g25720 316 QECQYYMKYGDCKYGSSCRYHHPP 339
                 58********************97 PP
5zf-CCCH35.61.5e-11361385327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++C++fa++G Ck+G++CkF H++
  CA01g25720 361 APICSHFAQNGVCKFGPSCKFDHPM 385
                 589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2114977IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54976IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-95276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.84595123IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-695122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-696122IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-997122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333141169IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5143169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638312340IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5312339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6315339IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9316339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4318339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6357384IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971358386IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-9361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MERYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR  60
TGFCGYGGRC RFNHPRDRTS VLGAMRATGG EYPERMGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAP VTVNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG  180
PGPLTAPAAV PAPHIYPPVQ SPSVQSAQQY GVVSGNWPVA RPTLLPGSYI PGTYGSMLLP  240
PGMVPLPGWS PYPAPVSPVP SPSTQLPAAA GPIYGLSQLS PSAPAYTGPY LSVPSSAGPS  300
SSSQKEPAFP ERPGLQECQY YMKYGDCKYG SSCRYHHPPE WSGPKTSFIL SAMGLPLRPG  360
APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSAV GTLAPSSSSS  420
DLRPELVSGS GRDGFSTQLS SMSSASGSVG SMFSKGGPSH SGAQKSVQSS NPSSSSSSAG  480
HGSEGRTSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437121e-153AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9755131e-153HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542102.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-158C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1U8E4C00.0A0A1U8E4C0_CAPAN; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2G3ALF00.0A0A2G3ALF0_CAPAN; zinc finger CCCH domain-containing protein 34
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-125C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]