PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g22410
Common NameWRKY1
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 318aa    MW: 35464.7 Da    PI: 6.7017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g22410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33172228258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 +Dgy+WrKYGqK vk+s+fpr+YYrCtsa+C+vkk+ver+ +dp++v++tYeg+H+h
  CA01g22410 172 EDGYRWRKYGQKAVKNSPFPRNYYRCTSATCNVKKRVERCFSDPSIVVTTYEGKHTH 228
                 8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381302.2E-1211316IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.4E-34156231IPR003657WRKY domain
SuperFamilySSF1182901.29E-28163229IPR003657WRKY domain
PROSITE profilePS5081131.238166231IPR003657WRKY domain
SMARTSM007749.4E-39171230IPR003657WRKY domain
PfamPF031062.1E-25172228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYYLDNNFAV TNSHSFTGLI SDYYGVEGRN IMNTSSSLGF MELLGFQDLM CSSSASFFEL  60
PKEENSCPAV CVSEEVKPTA GESQNKLIST VAAANVFNTP STPNCSSISS ETNEGHTNTT  120
HEDAEAGEVL DHQDQQHTNT KQQLKAKKTV SQKKQREPRF AFMTKSEVDF LEDGYRWRKY  180
GQKAVKNSPF PRNYYRCTSA TCNVKKRVER CFSDPSIVVT TYEGKHTHLS PMNTIMPRPS  240
CYPITPVPAS PGAFPLPMQF NINQSFNNLT SSLAMNNQLD HAAFVAQGRR FCTSEMLGDE  300
GLLQDLMPST LIKENYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-271642311077Probable WRKY transcription factor 4
2lex_A3e-271642311077Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2299920.0AY229992.1 Capsicum annuum transcription factor CaWRKY1 (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311512.10.0probable WRKY transcription factor 23
TrEMBLQ5DT880.0Q5DT88_CAPAN; Transcription factor CaWRKY1
STRINGPGSC0003DMT4000233681e-153(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-54WRKY DNA-binding protein 23