PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g19640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 268aa    MW: 29831.5 Da    PI: 5.8422
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g19640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.3e-08435536
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                 C+ ++++e++ +C+ ++  lC+ C  + H+ 
  CA01g19640  4 QCDVCDKEEASVYCTADEATLCQRCDYQVHRA 35
                7***************************9*75 PP
2zf-B_box28.24e-095592338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                 + C+ ++e ++ lfC++++  lC++C l +H+   Ht
  CA01g19640 55 SPLCDICQERRALLFCKEDRAILCKECDLPIHRAneHT 92
                689*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000214.91E-6335No hitNo description
SMARTSM003364.4E-6447IPR000315B-box-type zinc finger
PfamPF006431.8E-7442IPR000315B-box-type zinc finger
SMARTSM003362.2E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.45253100IPR000315B-box-type zinc finger
PfamPF006431.1E-75592IPR000315B-box-type zinc finger
CDDcd000216.99E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKIQCDVCDK EEASVYCTAD EATLCQRCDY QVHRANKLAS KHLRFSLVHP SFKDSPLCDI  60
CQERRALLFC KEDRAILCKE CDLPIHRANE HTQKHNRFLL TGVQLSSAVL ANYNNNQTSS  120
SSMSPTGSEA SNAGTNNLKA RSGNSGMKSN SISTTDQSTP GYFQVDCIQE GSVSTGSISE  180
YLIETLPGWH VEDLLQYPCS SQYGKDLTLY SLTITIATPF AKQCRSTLLC NTLLLYLCKN  240
NRTEDNNIVL DEKNSEEMIS YDHLLVE*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539821.10.0PREDICTED: B-box zinc finger protein 20 isoform X1
SwissprotQ0IGM72e-66BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A1U8E0780.0A0A1U8E078_CAPAN; B-box zinc finger protein 20
TrEMBLA0A2G3AH160.0A0A2G3AH16_CAPAN; B-box zinc finger protein 20 isoform X1
STRINGSolyc01g110180.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-67DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]