PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g17310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 270aa    MW: 30047.7 Da    PI: 6.8493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g17310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-14107154355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h  +Er+RR+r  + f+ L + +P +     kKl+Ka+iLe A++YI +Lq
  CA01g17310 107 QEHILAERKRRERFSHLFAVLAKTIPGL-----KKLDKASILEDAIKYIGELQ 154
                 78999***********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11107154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16108168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15108164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-12109158No hitNo description
SMARTSM003531.4E-13110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MENASFNNNT DGEEAPFEFK NLLSEMFTSF PNQNPNTFFS SPNSSTSTNS SSSSQNNIIS  60
FGNPDSNHLD PQDNELEYEK MLMMSSNIST SSTTVAKRIC RSPLQSQEHI LAERKRRERF  120
SHLFAVLAKT IPGLKKLDKA SILEDAIKYI GELQERVSTL EEAAGTTKTG NLIESTSTAQ  180
KPHSLAAITS HHDNSFKNVD HESKYHDMKV QILDKNVLIG INCSKQMRNI FSIIAGIMEK  240
LHLTIHHIRV APSNHSTALH YISILAEVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754459e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755189e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558439.11e-135PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2G3AIY21e-177A0A2G3AIY2_CAPAN; Uncharacterized protein
STRINGXP_009623662.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-23bHLH family protein