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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA01g16690 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 671aa MW: 74351.1 Da PI: 6.1013 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.7 | 6.1e-29 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
CA01g16690 214 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 267
79*******************.********************************8 PP
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| 2 | Response_reg | 81.3 | 3.2e-27 | 34 | 142 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ +++l+++l++ +y ev+ + +e al l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga
CA01g16690 34 VLVVDDDPTCLRILEKMLRNCHY-EVTKCNRAEIALSFLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKGVTHGAY 128
89*********************.***************999999**********************6654.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
CA01g16690 129 DYLIKPVRIEALKN 142
**********9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.6E-181 | 13 | 661 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 3.98E-36 | 31 | 155 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 5.9E-42 | 31 | 155 | No hit | No description |
| SMART | SM00448 | 1.0E-30 | 32 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.505 | 33 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 2.5E-24 | 34 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 5.56E-28 | 35 | 147 | No hit | No description |
| PROSITE profile | PS51294 | 11.948 | 211 | 270 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.05E-20 | 212 | 271 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 213 | 272 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.0E-25 | 214 | 267 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.8E-9 | 216 | 266 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 671 aa Download sequence Send to blast |
MNIGSGSLVT VPSSTGSWKS GDIVSDQFPV GLRVLVVDDD PTCLRILEKM LRNCHYEVTK 60 CNRAEIALSF LRENKNGFDI VISDVHMPDM DGFKLLEHIG LEMDLPVIMM SADDSKDVVM 120 KGVTHGAYDY LIKPVRIEAL KNIWQHVVRK RKYEWKDNNF DQSGSVEEGD RQQKPSEDVD 180 YSSSANEGNW KNSKKRKEEE EEVEDRDDTS NLKKPRVVWS VELHQQFVQA VHQLGIDKAV 240 PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSQHQN GLNNSFMGRP DTTFCTISSL 300 NGLDLQALAA AGQIPAQNLA TLQAAALGKS ATKSAISMPL DQRNFFSFEN SKLRFPEGQQ 360 QLNNSNKQID LLHGIPTTME SKQLANLHHP SQSFMGMNMQ VNSTSQHNNS VLMRLSQSQP 420 RTQLLNGANN GSQVSRLPLS MQQSLSPVLT QSGIVDNARG SVYNPVSQAS SMVDFSVNQS 480 KELQSYNFSL GSNSSGLSSL TNRGMLQEEV NSDIKGSRGF PSNYDIFNEL QPKSQNWGLQ 540 NDGSTFDTSL HPCMQGTQDV SSQLLLQQGI SSTHNSGQNR NAPIEKPMYS NGDEIGHSNT 600 MCGSQLNSGG GNMLAVKAER FPDADYQNTN IREQFGRDDL MSAFLRQQAS VGPVETEFGF 660 DGYTLDNLPV * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-21 | 213 | 273 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016581776.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A1U8HEG1 | 0.0 | A0A1U8HEG1_CAPAN; Two-component response regulator | ||||
| TrEMBL | A0A2G3AIZ9 | 0.0 | A0A2G3AIZ9_CAPAN; Two-component response regulator | ||||
| STRING | XP_009591694.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3191 | 24 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-158 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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