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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g09930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 161aa MW: 18255.2 Da PI: 4.1754 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.9 | 1.7e-10 | 17 | 84 | 2 | 69 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt +e l+L++ r+++ + +++ + ++W++ + + ++g++rs +qCk++we++ +y k+k +e CA01g09930 17 WTLHESLTLVNEMRSTQIECGNTLASFQKWQSTVQSCNSQGVNRSLNQCKKRWESMLEQYNKVKPWEM 84 ****************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.9E-9 | 16 | 83 | No hit | No description |
PROSITE profile | PS50090 | 6.597 | 17 | 73 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEKTSGLRTR SQAAPDWTLH ESLTLVNEMR STQIECGNTL ASFQKWQSTV QSCNSQGVNR 60 SLNQCKKRWE SMLEQYNKVK PWEMAYWSDF DEERKRELEL PEEFDCELFK GIESYLSCLE 120 GEDGAGADTD PDTDPEAQQV PGNNAFFEIG TASLFNIFGC * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574293.1 | 1e-109 | PREDICTED: trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1U8GZR1 | 1e-107 | A0A1U8GZR1_CAPAN; trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2G2XM58 | 1e-107 | A0A2G2XM58_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3AGL9 | 1e-107 | A0A2G3AGL9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3DDP1 | 1e-107 | A0A2G3DDP1_CAPCH; Uncharacterized protein | ||||
STRING | Solyc08g069160.2.1 | 6e-86 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400075981 | 6e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8360 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 2e-26 | sequence-specific DNA binding transcription factors |