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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g05390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 289aa MW: 32746.9 Da PI: 8.769 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 152 | 173 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C++ F+++ L +H H CA01g05390 152 QCEICHRIFKTSQALGSHRTIH 173 7*****************9887 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00091 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk F + L H r+H CA01g05390 204 HECPFCGKKFQSGQALGGHKRSH 226 79***********9999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.52E-8 | 7 | 30 | No hit | No description |
Pfam | PF13912 | 3.9E-7 | 8 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 8 | 30 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 8 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 10 | 30 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.52E-8 | 146 | 173 | No hit | No description |
SMART | SM00355 | 0.42 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.663 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.001 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 200 | 226 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.78E-6 | 201 | 227 | No hit | No description |
Pfam | PF13912 | 5.2E-10 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 204 | 226 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MSLSMEKHKC KLCSKKFLSG KALGGHVRSH LIPLPLPPKS TPPLNQDSGS RSESTLSLCS 60 SENQQHLLEH MDFYYGLREN PKKSFRMIDP EFYESETESE RNPSNRKRFK GSPNKEKAAD 120 FVSLSLYSDE KDIAMCLMML SRDVWKDSKL NQCEICHRIF KTSQALGSHR TIHKIKNCNN 180 YEHEARKNSS KRKLASVKNA QKLHECPFCG KKFQSGQALG GHKRSHFVTM STSTTGSSSS 240 TTKFGDYSLM EYSNSADFPN GYIDLNMPAP MEDNDFSQVE FQQEQEFA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-68 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553486.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A2G3AES7 | 0.0 | A0A2G3AES7_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012154 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-27 | C2H2-like zinc finger protein |