 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CA01g05390 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 289aa MW: 32746.9 Da PI: 8.769 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA01g05390 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00019 | 152 | 173 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C++C++ F+++ L +H H
CA01g05390 152 QCEICHRIFKTSQALGSHRTIH 173
7*****************9887 PP
|
| 2 | zf-C2H2 | 11.5 | 0.00091 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp Cgk F + L H r+H
CA01g05390 204 HECPFCGKKFQSGQALGGHKRSH 226
79***********9999999998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 2.52E-8 | 7 | 30 | No hit | No description |
| Pfam | PF13912 | 3.9E-7 | 8 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.17 | 8 | 30 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.827 | 8 | 35 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 10 | 30 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.52E-8 | 146 | 173 | No hit | No description |
| SMART | SM00355 | 0.42 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.663 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 0.001 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 200 | 226 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 8.78E-6 | 201 | 227 | No hit | No description |
| Pfam | PF13912 | 5.2E-10 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.016 | 204 | 226 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.388 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MSLSMEKHKC KLCSKKFLSG KALGGHVRSH LIPLPLPPKS TPPLNQDSGS RSESTLSLCS 60
SENQQHLLEH MDFYYGLREN PKKSFRMIDP EFYESETESE RNPSNRKRFK GSPNKEKAAD 120
FVSLSLYSDE KDIAMCLMML SRDVWKDSKL NQCEICHRIF KTSQALGSHR TIHKIKNCNN 180
YEHEARKNSS KRKLASVKNA QKLHECPFCG KKFQSGQALG GHKRSHFVTM STSTTGSSSS 240
TTKFGDYSLM EYSNSADFPN GYIDLNMPAP MEDNDFSQVE FQQEQEFA*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975447 | 2e-68 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
