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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g01920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 326aa MW: 36947 Da PI: 6.0515 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.4 | 1.5e-28 | 136 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s ++ ++++tY+ eHnh+ CA01g01920 136 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTEHGIFIVTYTAEHNHS 194 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-30 | 121 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.422 | 130 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 132 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 135 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-24 | 137 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MIMDWGLQAV VIGSSSTSCS DIHGSNYVDF SPNLDFQESE YLSFSHHHHQ HHEMKKEVYS 60 DELEQLYKPF YHVGGQNMLM GSSISLVPKE VIKEEKREEE QQQVVAASNT YVPKYKKRKN 120 EQKRVVLQLK ADDLSSDKWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEQSCTEH 180 GIFIVTYTAE HNHSQPTRRN SLAGTTKSKF PNSKNSINSP KKIVKEEKIT SPHCSTSNLG 240 LSPEAARMID EFPEINQENN IIIGGDNNYY DEDGMRNIFE GSDENECVSI EEMFDGDFFA 300 GLEDIHDGFN SSFGCNNSAF PFSST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-17 | 124 | 196 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 4e-73 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 4e-73 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552689.1 | 0.0 | PREDICTED: probable WRKY transcription factor 29 | ||||
TrEMBL | A0A1U8F8X7 | 0.0 | A0A1U8F8X7_CAPAN; Putative WRKY transcription factor 27 | ||||
TrEMBL | A0A2G2XJM1 | 0.0 | A0A2G2XJM1_CAPBA; Putative WRKY transcription factor 27 | ||||
TrEMBL | A0A2G3ADN6 | 0.0 | A0A2G3ADN6_CAPAN; probable WRKY transcription factor 29 | ||||
STRING | PGSC0003DMT400032091 | 1e-164 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5781 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 9e-34 | WRKY family protein |