![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g01870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 1013aa MW: 114351 Da PI: 9.842 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.5 | 1.1e-10 | 45 | 88 | 5 | 52 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 G+r++k +gr+ A I d +k+k ++lg+f+t eeAa+a+ +++ CA01g01870 45 GIRRRK-SGRYSATITDR---NKHKEVYLGTFDTIEEAAQAYQSKKLE 88 9**999.7******9993...456*****************9776655 PP | |||||||
2 | AP2 | 28.4 | 4.2e-09 | 168 | 215 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 + G+ ++k +gr+ A I d + k+k ++lg+f+t eeA +a+ + ++e CA01g01870 168 VIGIKRRK-SGRYSATITDrV----KHKEVYLGTFDTTEEASQAYFSKKSEFE 215 67999888.7*********54....35******************87776666 PP | |||||||
3 | AP2 | 37.7 | 5.2e-12 | 225 | 273 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 +++ GV+ +k +gr++++Ir p ++ kr+++g+f taeeAa+a+ +++ CA01g01870 225 PHIIGVHKRKVTGRYESQIRNP----ISkKRIWVGSFSTAEEAARAYQSKKLE 273 5789*****************7....246******************776665 PP | |||||||
4 | AP2 | 36.3 | 1.4e-11 | 354 | 401 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 G+ ++k +gr++AeI dp +r kr +lg+f+t eeA +a+ + ++e+e CA01g01870 354 GIKRRK-SGRYAAEITDP----IRhKRLWLGTFDTVEEASQAYLSKKFEFENE 401 888888.8*********7....357******************9999999876 PP | |||||||
5 | AP2 | 35.4 | 2.7e-11 | 467 | 514 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 G+ ++k +gr++AeI dp +r k+++lg+f+t eeA +a+ + ++e+e CA01g01870 467 GIKRRK-SGRYAAEITDP----IRhKKVWLGTFDTVEEASQAYLSKKSEFENE 514 888888.8*********7....357******************9998888875 PP | |||||||
6 | AP2 | 32.6 | 2e-10 | 600 | 644 | 5 | 53 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 G+r++k +gr+ A I dp + k+++lg+f+t eeA +a+ + ++ CA01g01870 600 GIRRRK-SGRYSAKITDPM----KhKQVYLGTFDTIEEASQAYLTKKSEF 644 99*999.7*********84....35******************8776665 PP | |||||||
7 | AP2 | 29.4 | 1.9e-09 | 720 | 766 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 G+ ++k +gr++AeI dp +r kr lg+f+t eeA +a+ + ++e+ CA01g01870 720 GIKRRK-SGRYAAEITDP----IRhKRLLLGTFDTVEEASQAYLSKKSEYEK 766 888888.8*********7....357******************999888875 PP | |||||||
8 | AP2 | 33.4 | 1.1e-10 | 801 | 847 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++ GV+ +k +gr+ ++I+ p ++ kr++lg+f taeeA +a+ ++ CA01g01870 801 HIVGVHKRKATGRYTSQIKNP----ISkKRIWLGSFRTAEEASQAYQSKKL 847 789**************9997....246*****************976665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.365 | 42 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-10 | 44 | 89 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-7 | 44 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-11 | 45 | 82 | No hit | No description |
SMART | SM00380 | 8.1E-5 | 45 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-12 | 45 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.415 | 164 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-8 | 168 | 213 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.9E-5 | 168 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0093 | 170 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-9 | 170 | 207 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-7 | 225 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-8 | 226 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-11 | 226 | 275 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.104 | 226 | 288 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-13 | 229 | 274 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.63E-12 | 229 | 267 | No hit | No description |
PROSITE profile | PS51032 | 14.816 | 351 | 413 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-11 | 352 | 400 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-5 | 354 | 405 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-13 | 354 | 400 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.15E-13 | 354 | 391 | No hit | No description |
Pfam | PF00847 | 1.1E-6 | 354 | 401 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.88 | 464 | 526 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-10 | 466 | 511 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-5 | 467 | 532 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-13 | 467 | 506 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-12 | 467 | 504 | No hit | No description |
Pfam | PF00847 | 1.2E-6 | 467 | 514 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.892 | 597 | 657 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-10 | 599 | 643 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.7E-5 | 599 | 645 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-5 | 600 | 663 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-11 | 600 | 637 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.58E-12 | 600 | 637 | No hit | No description |
PROSITE profile | PS51032 | 12.194 | 717 | 757 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-9 | 719 | 763 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.4E-4 | 720 | 763 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-11 | 720 | 757 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-11 | 720 | 757 | No hit | No description |
Pfam | PF00847 | 1.1E-4 | 720 | 766 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-5 | 800 | 845 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-6 | 801 | 856 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.88 | 801 | 864 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-9 | 802 | 850 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-11 | 804 | 849 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1013 aa Download sequence Send to blast |
MESSSIAING TSAVVMAERS KKRDGENLKQ PKEPESTKAT RSLIGIRRRK SGRYSATITD 60 RNKHKEVYLG TFDTIEEAAQ AYQSKKLEFQ KIVDANRQCG NEIDVQISNS TNDGAEQRID 120 GQELGIVEED FRVYQSKKQR EFSCLMGKES SDECNITTSC DSNVKRSVIG IKRRKSGRYS 180 ATITDRVKHK EVYLGTFDTT EEASQAYFSK KSEFEKKYDP HKTTPHIIGV HKRKVTGRYE 240 SQIRNPISKK RIWVGSFSTA EEAARAYQSK KLEFQKLVDA KGQCGNENDV QISNSENDGA 300 ERKIDCHETG IVEEDFRVYP SEEKREFSCL KSKESSDEYD ITTSDSNVKK SLIGIKRRKS 360 GRYAAEITDP IRHKRLWLGT FDTVEEASQA YLSKKFEFEN EKLRQQGNKK NKPIKSFDQI 420 WPESPVVETL DTASMGRRNA RIDSQTSSDE CNTTTRCDPK SKRSLIGIKR RKSGRYAAEI 480 TDPIRHKKVW LGTFDTVEEA SQAYLSKKSE FENEKLRQQG NKKNKPTKSF DQIWPESPVV 540 ETLNTANMGR RSIRIDSQGK EPGSSKATSG LRTNVRGDES SDECNITTNG DPKAKISLIG 600 IRRRKSGRYS AKITDPMKHK QVYLGTFDTI EEASQAYLTK KSEFEKVSQR GEKENKPKRN 660 CDQIQHESSV METFNTTSMG RRNARIDSQG KELRFSEKTS SDGCNTTTRC DPKSKRSLIG 720 IKRRKSGRYA AEITDPIRHK RLLLGTFDTV EEASQAYLSK KSEYEKLSQG NKEDRSKKKC 780 DQVQQPESSP VAAASLPVDT HIVGVHKRKA TGRYTSQIKN PISKKRIWLG SFRTAEEASQ 840 AYQSKKLEFQ KLVEAKQQQR ANKKQTHSKH DGKSKKLVNV KQEHENDNCE LKSAGGSEIK 900 GPISNSSSGG ADQRINSHET GALEEAFHAY LSKKLDSQSS KEVEVQNNMP TDSSAGKKQD 960 GQEDDKDILM GQWIQLPGDR EVMFSLKLGL PIIDNYGSLL GEFSSMDDLS IS* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027775191.1 | 0.0 | uncharacterized protein LOC114078472 | ||||
TrEMBL | A0A2G3ADK6 | 0.0 | A0A2G3ADK6_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400031751 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-14 | ERF family protein |