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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g01850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 48622.9 Da PI: 10.0228 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29 | 2.7e-09 | 82 | 128 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 G+ k +gr+vA+I dp + k++++g f+t eeA +a+ + ++e+ CA01g01850 82 GIKKQK-NGRYVARITDPI----KhKQVHVGVFDTIEEASQAYLSKKSEFEN 128 777666.8*********72....46******************988877765 PP | |||||||
2 | AP2 | 24.8 | 5.3e-08 | 160 | 199 | 3 | 45 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 + G + +kk+gr+ + I p ++ k++slg+f+taeeA +a CA01g01850 160 IIGAYMRKKTGRYYSKITNP----ITkKKISLGTFDTAEEASRA 199 667799********998886....246**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.007 | 79 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.007 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-8 | 81 | 128 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-8 | 81 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.027 | 159 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.665 | 159 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-8 | 161 | 208 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-8 | 166 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.704 | 285 | 342 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-5 | 285 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MAMKTDGIAL FTDEEEETCY KKQKTRKVSE IFVDKVNSTN HSCLMSIGKK TGLMTKVRGA 60 ESCDECNVST CCDSKAKISL TGIKKQKNGR YVARITDPIK HKQVHVGVFD TIEEASQAYL 120 SKKSEFENKW KKNFEQPESP SVSASGRDRR IDSRERTTRI IGAYMRKKTG RYYSKITNPI 180 TKKKISLGTF DTAEEASRAF QSKKLQFQKL VDVKQEQCAN KHSRSNQDGT TLSGGLVNVK 240 RERENLICHE RFQHGGEAFR VCQSKNKQAF SCNTTTSWNT KAKRSFVGIK RQMDGGYAAV 300 ITDRVKHRKV WFDTFDTIEE SSQAYSSKKS EFEELSQQGN KENKSMKNCD QIQQPESSSV 360 VSRREKRIDS HGKEAGSSKA RSCLMTNVCG GESPDERSIT TNCDPKAKIS LIGIRRRKSG 420 EICSCDYRPN * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G3DAV7 | 0.0 | A0A2G3DAV7_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400031751 | 3e-74 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-10 | erf domain protein 9 |