PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g01840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 334aa MW: 38061 Da PI: 10.2577 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.3 | 2.1e-09 | 16 | 64 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +G+r+ +gr+ A I d + +rk+++lg+f+t eeA +a+ + +l++ CA01g01840 16 LRGIRRQQ-NGRYGAVITD----QiRRKQVRLGTFDTVEEASQAYFSKKSELKN 64 59**9766.9*********....4456******************998888876 PP | |||||||
2 | AP2 | 31.2 | 5.6e-10 | 90 | 135 | 5 | 54 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr+ A I dp + k ++lg+f+t e+A +a+ + + ++e CA01g01840 90 GIRRRK-SGRYSAKITDPI----KhKEVYLGTFDTIEQASQAYFNKKSEFE 135 9**999.7*********72....46******************98877766 PP | |||||||
3 | AP2 | 24.6 | 6.5e-08 | 192 | 227 | 7 | 45 |
AP2 7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 + k+ gr+ +eI +p + k+++lg+fgtaeeA a CA01g01840 192 YKSKTAGRYTSEIIHPI----TkKKIWLGTFGTAEEASHA 227 678999*********72....36**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.008 | 15 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-4 | 15 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-9 | 16 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-9 | 17 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0044 | 17 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.036 | 87 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-10 | 89 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.9E-5 | 89 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-11 | 90 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-4 | 90 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.18E-11 | 90 | 127 | No hit | No description |
PROSITE profile | PS51032 | 11.772 | 187 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-8 | 188 | 236 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.01 | 191 | 242 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-10 | 195 | 236 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MYRAQNQPIP TAKRCLRGIR RQQNGRYGAV ITDQIRRKQV RLGTFDTVEE ASQAYFSKKS 60 ELKNEKLNQQ CTNMHTRSEQ GPKDEISLIG IRRRKSGRYS AKITDPIKHK EVYLGTFDTI 120 EQASQAYFNK KSEFEKLRQQ GQTENIRKKN CDQIQQPESP TVVASLDTAA SARGRDKRTD 180 SHITTPLMIG AYKSKTAGRY TSEIIHPITK KKIWLGTFGT AEEASHAFQS KKLEFQKLVK 240 AKKQQCTQSK SEKLVNFKQG TAEETFHVNQ SKKFDLQSSK EVELQSDIPT DSSAGKKQEG 300 QEDDEDLWMG KWVQLPGDRE VMFSLILGLP NHR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016566267.1 | 1e-151 | PREDICTED: uncharacterized protein LOC107864421 | ||||
TrEMBL | A0A2G3ADR2 | 0.0 | A0A2G3ADR2_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031744 | 1e-113 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 6e-12 | ERF family protein |