PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g00240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 475aa    MW: 51837.2 Da    PI: 6.612
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g00240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.21.4e-23148191144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
  CA01g00240 148 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKHVE 191
                 79****************************************97 PP
2QLQ371.1e-1389124237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll+++++
  CA01g00240  89 PFTASQLQEFQRQSVICKYIMASMPVPPQLLLPLPN 124
                 9********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-588124IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.20489124IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-1089122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.704148192IPR014977WRC domain
PfamPF088791.1E-18149191IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGNGENSELL DLKMKTSTES SYPYKSSLFI SPSSHSGDDG GSGCGGPGDF VGSDIYDVVS  60
SDAALSSRPL QQPFNYTARG SMGLFGKVPF TASQLQEFQR QSVICKYIMA SMPVPPQLLL  120
PLPNHPSPAH LPQSNTSGLD LKFSSGSDPE PWRCKRTDGK KWRCSRDVAP DQKYCERHAH  180
KSKPRSRKHV EIHNSNSNSN SNRHPPAPKS NNKHHSLQFP SDQTSGCFDF IDSLYFLNYV  240
CGSTSLFWPL CTYANKCRID WCIEWLERGD RSGTIPVVTS NHQNLQQLMQ SSSGVGFNND  300
NTDQNRRITP AFQVQDEAKV YPLNFNQYMS NTGQALGSQL KNEQCNDSVI SSFQGRGTTR  360
DLIDACSKDG LSDGISNNGS FTSLTLSMSG WNRGMDDDNE HAQVTIGDEV LRSQWLNPVS  420
WMSSTAPGGP LGEALCLGNA TNLPSPHGYS NSTVTSSCSF GSCENGSHGF DFIG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092612e-69AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankAP0092802e-69AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence.
GenBankHG9754472e-69HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-69HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565105.10.0PREDICTED: growth-regulating factor 8 isoform X1
TrEMBLA0A1U8G1W60.0A0A1U8G1W6_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AD280.0A0A2G3AD28_CAPAN; growth-regulating factor 8 isoform X1
STRINGPGSC0003DMT4000318930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-28growth-regulating factor 8