PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g00060
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 478aa    MW: 52495.2 Da    PI: 6.6249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g00060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31001.4e-31105209199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  CA01g00060 105 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDRLF 203
                 89***************************966778999*************************************************666999999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++r+
  CA01g00060 204 IDWRRR 209
                 999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-4295212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29102208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-26103192No hitNo description
SMARTSM010191.4E-22105210IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649105210IPR003340B3 DNA binding domain
PfamPF023623.9E-29105209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNFFSGGHGF NDQGSSKGTH PFSNSSSSSS QKILVPFSYH QQRRSWLSSS SITSNSSEDN  60
TDPVMMDTPP STNLCEGDPV DENHLLELGV GESNAMALIE REHMFDKVVT PSDVGKLNRL  120
VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK  180
KLDAGDIVSF QRGVGELGKD RLFIDWRRRP DAPDHLFTTH LPLSHHFSNN NFYRSNIHYP  240
AAASAWNRPL FLQPSPSDSS YLHSRMMMEP AAGSMSRQQQ SYSPHSNSAY GSVGNCPNYY  300
YDVTCNFDNM NSNSATVVNG NPPPSGSLVY LRSGSAAAVA AQVPQQVGLM QRCTSSSTST  360
STVGGSGRIV EPVVFDLVPV VQGKSAAKRL RLFGVNMDCS ISDSDESCEI MSSSSSLPSP  420
AATTTYSHVP QFLSSSPPIP SLQCRTFNSY EVNPPPAATE EEAFDKGKTS MSLDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66982101114B3 domain-containing transcription factor NGA1
5os9_B2e-66982101114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-151HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565012.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2
TrEMBLA0A1U8G0Q60.0A0A1U8G0Q6_CAPAN; B3 domain-containing protein
TrEMBLA0A2G3AD630.0A0A2G3AD63_CAPAN; B3 domain-containing transcription factor NGA1-like isoform X2
STRINGPGSC0003DMT4000318630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-70B3 family protein