PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g94850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 629aa MW: 72714.7 Da PI: 9.1093 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 422 | 461 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+ + k++G++ Wk a ++g + + ++k+ w+ CA00g94850 422 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 461 8*****************99.********9..56777887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.11 | 346 | 417 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 349 | 435 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.192 | 416 | 468 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0081 | 419 | 466 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.65E-9 | 420 | 481 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00971 | 422 | 451 | No hit | No description |
Pfam | PF13921 | 1.6E-10 | 423 | 481 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-9 | 436 | 472 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.629 | 465 | 533 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.88 | 469 | 535 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 473 | 534 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.34 | 535 | 588 | IPR017877 | Myb-like domain |
SMART | SM00717 | 22 | 539 | 590 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE 60 DVVKYVERKK NNKLKKSCLN EPPLDFKISA PASASEMRDS EKVVETLGEI SSGDVVDEIR 120 RKKKSKKNVK TTNVVGVANT DIEAKTDDCD LKRKKEKKHG KHSEKFNEDS DEVALRIVEG 180 KKSRKLKKSR VAEQEKMHDT EDVQEDIVAE VDEGDISSPI KIEEKNRTDN GNIKKRKKVK 240 SGHSSEDPTH EIEEKNRTDN GNIKKRKKVK SGHSSEDPTH EIEEENRTDN GNIKKKKKVK 300 SGHSSEDPTH EKSAKKVRFS GHVQIFPSSD DPSDEKHEIE DENLLRGKRF SKLEDEIVKE 360 AVHKYVDFHN LGEEGLKKIL NSRSYPEIKG CWKEIGSAIP YRPYTAVYYR AQILFRRSES 420 RKWTEEEYEI VRKFQKEHGN NWKVLADELG KHRFHVKDTW RRIKRPNQNK GQWTQEEYQS 480 LFDLVNTDLR LRLSEEKRSK YGMLRDNIAW TAISDKLSTR TEANCCLKWY DQLTSPMVAK 540 GEWADVDDYR LVDALFELDA SCIEDVDWDN LLDHRPGEIC RKRWNQMVLH IGKLKNSSFA 600 EQIEVLAKRY RPDFAEVREA WDNKPVVP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | KKKKKRK |
2 | 40 | 45 | KKKKRK |
3 | 263 | 267 | KKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563894.1 | 0.0 | PREDICTED: RNA polymerase I termination factor-like | ||||
Refseq | XP_016563895.1 | 0.0 | PREDICTED: RNA polymerase I termination factor-like | ||||
Refseq | XP_016563896.1 | 0.0 | PREDICTED: RNA polymerase I termination factor-like | ||||
TrEMBL | A0A2G2XTH5 | 0.0 | A0A2G2XTH5_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030947 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-134 | MYB_related family protein |