PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g93670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26907.5 Da    PI: 9.5885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g93670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.87e-191662349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +n+s+ qvtfskRr+g++KKA+EL+ LC+ae+a+++f +  k y +
  CA00g93670 16 MQNESKLQVTFSKRRAGLFKKASELCNLCGAEIAIVVFYPGRKAYSF 62
                5799*********************************9877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-24665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.413666IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-23779IPR002100Transcription factor, MADS-box
CDDcd002654.03E-30775No hitNo description
PRINTSPR004048.5E-16828IPR002100Transcription factor, MADS-box
PfamPF003196.0E-221662IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTRRSKGRQR IDIAKMQNES KLQVTFSKRR AGLFKKASEL CNLCGAEIAI VVFYPGRKAY  60
SFGHPSVELL VDRFLGRNLP PPNNAGCHNH LLVNHQNASL RELNKKVMDM EEIFWMEKAR  120
GESILDIRRA NGGWWEAPIN ALSLSQRQQL MEAMKFLKQD VEKEAQQLQM VTNVGLPFLH  180
LEVPCLLLMV LGHVLHMDSM LXCLLLMVLG HVLHMDSMLV QPLLIGFRAS TSSAVPY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581995.11e-146PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2XTL91e-172A0A2G2XTL9_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.13e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-48AGAMOUS-like 62