PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g91210
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22678.2 Da    PI: 10.1682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g91210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  CA00g91210 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                69************************************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.899654IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-28667IPR002100Transcription factor, MADS-box
CDDcd002651.10E-30777No hitNo description
SuperFamilySSF554551.7E-23780IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241564IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPRRRKGQKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDRFLGRD LPPPNNEGHH NHLLMNHRNV FLRELNKEVM NMEEILQMEK  120
AHRESILEIR RRANGGWWEA PINALNLSQL KQLMEAMEFL KQDVEKEAQQ QQMVTNVGLP  180
FLTFGSSLSP TNGARAISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115PRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554465.11e-116PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2XTT71e-139A0A2G2XTT7_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.11e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-49AGAMOUS-like 62