PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g91200
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 892aa    MW: 98643.9 Da    PI: 6.3749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g91200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24130231199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++ +l+
  CA00g91200 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WNENNQLL 225
                 99*****************************97677775.9************************************************..7888889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  CA00g91200 226 LGIRRA 231
                 ***997 PP
2Auxin_resp120.99.6e-40256339183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  CA00g91200 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44123245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-23129230No hitNo description
PfamPF023621.1E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042130232IPR003340B3 DNA binding domain
SMARTSM010194.3E-25130232IPR003340B3 DNA binding domain
PfamPF065071.1E-34256339IPR010525Auxin response factor
PfamPF023092.4E-6747839IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-5752831No hitNo description
PROSITE profilePS5174522.009757841IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MRVSSAGFNP QPEEGAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSPQEQK DVCLLPAELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNGDMTMNSP FSWLRGDMAD QGMQSLNFQG  420
FGVTPFVQPR IDASMFGLQP DILLTMAALD PSKLANQSLV QFQQSIPSSS VSLSQSQMLQ  480
PSHSQQNLVQ GFSENQLISQ AQMLQQQLQR RQNYSDQQQL LQPQLQQHQE VNSQFQHQQQ  540
TKAISSLSQM ASATQPQHSH LQVLSSTGPQ HTFSDILGNH VNASNNSVMQ NLLSSFSRDE  600
ASAVLNMHES HPLVSLSSSS KRIALESQLP SRVTPFVVSQ PEDVMANNAK VSNLTSLLPP  660
FPGRESFPDY KGVEDSQSNA LYGFTDSLNI LQTSMSNMKD SSGDNGSLSI PYATSTFTST  720
AGNEYPLNSD MTTSSCVDES GFLQSSENGD QANPTNRTFV KVHKSGSFGR SLDISKFSSY  780
HELRSELARM FGLEGLLEDP ERSGWQLVIV DRENDVLLLG DGPWQEFVNN VWYIKILSPL  840
EVQQMGKEGL DLPNGVQAQR LPGNVNGCDD YLNQKGSRST MNGIPLGSLD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621336042388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556704.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8FLR60.0A0A1U8FLR6_CAPAN; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]