PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g89460

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 441aa MW: 47838.5 Da PI: 8.1724

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g89460	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	47	70	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+C yG+rC+F+H+p CA00g89460 47 PDCGYYRRNGFCGYGARCRFNHPP 70 78********************97 PP
2	zf-CCCH	34.7	2.9e-11	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG Ck+G+ Ck++H++ CA00g89460 91 GQAVCQYYMKTGMCKFGAFCKYHHPR 116 7899********************96 PP
3	zf-CCCH	22.6	1.8e-07	300	326	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+ ++G+CkyG++Ck++H+p CA00g89460 300 PGQPECRYCVKFGECKYGSSCKYHHPP 326 57899********************97 PP
4	zf-CCCH	31.1	4.1e-10	337	360	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G++CkF H+ CA00g89460 337 APICSHYSQVGVCKFGPSCKFDHP 360 589********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.08	43	71	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.1E-6	43	70	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-8	47	70	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	47	71	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	49	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	89	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	89	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.821	89	117	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-8	91	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.1E-4	94	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.77	135	163	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	25	140	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.441	299	327	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.01	299	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-5	301	326	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	333	360	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.009	334	362	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	334	361	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	337	360	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	339	359	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MWIVSDLFYL VFLVGCNAVE PILQLSVGVG GGNGSGSELY PERPNAPDCG YYRRNGFCGY 60 GARCRFNHPP NRSLVMEALR ATIGEHPERF GQAVCQYYMK TGMCKFGAFC KYHHPRQGEG 120 YPSLVTHNIH GYPLRPNERK FLHYMRTGQC KYDFTCKFHH HHPLPVQVPA SEPFLFPAAI 180 PPPTTYPALQ SPSIHSTEQY GMVFGNWPVL RPTLLSGSYL PRTYGPTLIP PEMVPMPDWT 240 SYLAFASPVA SQSTQSAGVG PVYGPMQLSA STLVGPCMSL TASPSASINI QKEFAFLNRP 300 GQPECRYCVK FGECKYGSSC KYHHPPQCYG SSLRPGAPIC SHYSQVGVCK FGPSCKFDHP 360 LGISYSPSAS FLADMPVAPY PGGSFVGTLD PSSSSSDLRP ELVSGSSKEV FSTQASSMSA 420 ASDPVGSMFS KGDPVSHSAV *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MWIVSDLFYL VFLVGCNAVE PILQLSVGVG GGNGSGSELY PERPNAPDCG YYRRNGFCGY  60
GARCRFNHPP NRSLVMEALR ATIGEHPERF GQAVCQYYMK TGMCKFGAFC KYHHPRQGEG  120
YPSLVTHNIH GYPLRPNERK FLHYMRTGQC KYDFTCKFHH HHPLPVQVPA SEPFLFPAAI  180
PPPTTYPALQ SPSIHSTEQY GMVFGNWPVL RPTLLSGSYL PRTYGPTLIP PEMVPMPDWT  240
SYLAFASPVA SQSTQSAGVG PVYGPMQLSA STLVGPCMSL TASPSASINI QKEFAFLNRP  300
GQPECRYCVK FGECKYGSSC KYHHPPQCYG SSLRPGAPIC SHYSQVGVCK FGPSCKFDHP  360
LGISYSPSAS FLADMPVAPY PGGSFVGTLD PSSSSSDLRP ELVSGSSKEV FSTQASSMSA  420
ASDPVGSMFS KGDPVSHSAV *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267357.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
Swissprot	Q6NPN3	1e-105	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A2G2YFA6	0.0	A0A2G2YFA6_CAPAN; Uncharacterized protein
STRING	XP_009802825.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2412	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-104	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]