PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g88960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 291aa    MW: 32760.8 Da    PI: 7.1894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g88960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05119138120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C  C+k+F+r  n++ H+
  CA00g88960 119 FSCAVCNKTFNRFNNMQMHM 138
                 89*****************9 PP
2zf-C2H214.10.00014205227123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  CA00g88960 205 FNCRKCGKNFAVRGDWRTHEKNC 227
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5115140No hitNo description
SMARTSM003550.64119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055119146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5119138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM00355160168200IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.22E-6186225No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5191225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035580205225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQSTHNSITY VTSSEFEDEL STVLSLGPPG QINLQKNSTT TNFHDYFSSS SSSSFQFQSY  60
NNNNQEGVTV ALHIDSSSTT SSNNNNNNPS RNNNSNISLA NGQYWIPTPA QILVGPTQFS  120
CAVCNKTFNR FNNMQMHMWG HGSQYRKGPD SLKGTKQASS SMLRLPCYCC AEGCRNNIDY  180
PRSKPLKDFR TLQTHYKRKH GAKPFNCRKC GKNFAVRGDW RTHEKNCGKV WFCICGSDFK  240
HKRSLKDHVK AFGDGHAPHS ENSYYHHVEG DDDEEEDDDD DEEEHGNMGL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546575.11e-172PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2G2YCD50.0A0A2G2YCD5_CAPAN; Zinc finger protein WIP6
STRINGSolyc05g009770.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein