PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g84240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 460aa    MW: 50688.7 Da    PI: 9.0699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g84240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05828323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  CA00g84240  8 CEICGKGFQRDQNLQLHRRGH 28
                *******************88 PP
2zf-C2H213.50.0002182104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  CA00g84240  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                 58*****************9998 PP
3zf-C2H210.60.0018112130523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsr++++++H   +
  CA00g84240 112 DCGTIFSRRDSFVTHRAFC 130
                 8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-6528No hitNo description
Gene3DG3DSA:3.30.160.603.9E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.64E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHYCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR  120
DSFVTHRAFC DALAEETARV TAASNMHNSL ATGNNINYHF IGAPLGPNMA QHFSSLFKPL  180
PNNNNNNENS DPMRRDYQLS LWNMGVGQEQ EQIGININNF REIHHINPIH HTSPSAAAAA  240
AAATTVYDTT TLIPSRSNVP PVSYNNNNHV NWDQLVGTKI SSVNNAEQLS TVTSPNISVP  300
SLFSTQHQLP PSSTATMSAT ALLQKAAQIG ATTTTPTTTD PSIFLGNFGM MNNCNDKNNN  360
QLQEGDNNKF CGFYVSTGAT NNSISTSHGS DVDQSSSVND FSATIHPIQM YPPSKRRHIQ  420
IEDNVKGVGV GVGGGGQTRD FLGVGVQSIC HPPSINGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3678145370Zinc finger protein JACKDAW
5b3h_F4e-3678145370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580851.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-134IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1U8HBN50.0A0A1U8HBN5_CAPAN; zinc finger protein NUTCRACKER
STRINGPGSC0003DMT4000242720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-124C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]