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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g76770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 723aa MW: 82863.9 Da PI: 7.1013 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 101 | 1.2e-31 | 64 | 155 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++eHnHel+p CA00g76770 64 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEHNHELVP 155 9***************************************998888545677889***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-30 | 64 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-31 | 276 | 368 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 4.8E-12 | 544 | 590 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.263 | 556 | 592 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-9 | 567 | 594 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MNFGGGGSED GDVDGDDVLD EENVSHGNFA AVPSYSYSPP QGDLLDLEPY EGMLFESEEA 60 AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT KDREIKRPRT 120 ITRVGCKAAL SVKIQDSGKW VVSNFVKEHN HELVPPDQVH CLRSHRQISG PAKTLIDTLQ 180 AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SLEGDIQLLL DYLKHMNIQN 240 PGFFYAVQGD EDQCTGNVFW ADSKARTNYI YFGDTVTFDT TYRSNRYRLP FAPFTGVNHH 300 GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVISSAI MQVFPETRHR 360 FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FETCWLSLVD KYGLRDHDWL 420 QLIYLDRRQW VQVYLRDTFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF KLYEKAVESR 480 TEKEVKADYD TMNAFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF MANKVEDDGL 540 VTTYQVAKFG DDHRAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV TNVLTLPSHY 600 ILKRWSRSAK SNVALEDRVA DIINCYLESH TVRYNMLRHE AFKFVEKGAE TADSYAVAMT 660 ALEEASKKVS LVVKHDGRIS LVNGHCRENL IRNGVRGNYN IEDEQRSLAC PLAEVSHFLF 720 FV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540073.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G2XW38 | 0.0 | A0A2G2XW38_CAPAN; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | Solyc01g112320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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