PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g71530
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 327aa    MW: 37162.5 Da    PI: 8.0678
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g71530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++++ li+w + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ +ll++i 
    CA00g71530  10 FIMKTYQMVNDPKIDGLITWGAANNSFIVVQPLEFSQNILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQIHLLKNIV 97 
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
    CA00g71530  98 RKKHS 102
                   **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.7E-50699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.49E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEANNIIAPF IMKTYQMVND PKIDGLITWG AANNSFIVVQ PLEFSQNILP VYFKHNNFSS  60
FVRQLNTYGF RKVDPDKWEF ANEWFLRGQI HLLKNIVRKK HSRNSYSVCQ KHDNDSEDEE  120
ILNEISRLKQ EQKVLDDEIG NMTRRLEATE KRPQQMMAFL CKVVDDPEIL PKILMEKDKS  180
KRLMISNRDK KRRLMLSNSA SSQSLKSEEE KVGVKSSFYS PGSNFEKDAF CQSSPSSEST  240
PPVTGAAVHG GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXGSGGPVAE EASPPPYPFS LLGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2379917120Heat shock factor protein 1
5d5u_B4e-2379926129Heat shock factor protein 1
5d5v_B4e-2379926129Heat shock factor protein 1
5d5v_D4e-2379926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540531.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV525e-87HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1U8E2860.0A0A1U8E286_CAPAN; heat stress transcription factor C-1
STRINGPGSC0003DMT4000010251e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-87heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]