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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA00g61510 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 263aa MW: 28429.3 Da PI: 9.6819 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00024 | 205 | 224 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk+F ++ L+ H++++
CA00g61510 205 CSQCGKPF-KPEKLHAHMKSC 224
********.**********98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 263 aa Download sequence Send to blast |
MDSSKKTPSE IEEESQNIAS ETSTITTDNS PKFQEEEEEK VNNFDNSFSS NSSSSISSFG 60 SMKTKKKIDQ DHHHVIEHGE NNSTDKNSSK NPKFNKSKSY SNGASSIFRN LITCGAVDTN 120 DAGIVPLRKN KTSLSSDKTV SFSSEICKAD KIGGSQRIFG TSWNQQTTNG RKSCDGAFGY 180 SKNKSEFGSR RSVSANYKPI NGPNCSQCGK PFKPEKLHAH MKSCKGMKAL AKGAYSATAA 240 ATEKTSKDAS KVDSLSAKFL TH* |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975513 | 3e-33 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016543169.1 | 0.0 | PREDICTED: protein UPSTREAM OF FLC | ||||
| Refseq | XP_016543179.1 | 0.0 | PREDICTED: protein UPSTREAM OF FLC | ||||
| Refseq | XP_016543188.1 | 0.0 | PREDICTED: protein UPSTREAM OF FLC | ||||
| Refseq | XP_016543196.1 | 0.0 | PREDICTED: protein UPSTREAM OF FLC | ||||
| TrEMBL | A0A2G2XRL2 | 0.0 | A0A2G2XRL2_CAPBA; Uncharacterized protein | ||||
| TrEMBL | A0A2G3ALN9 | 0.0 | A0A2G3ALN9_CAPAN; Uncharacterized protein | ||||
| TrEMBL | A0A2G3DIE6 | 0.0 | A0A2G3DIE6_CAPCH; Uncharacterized protein | ||||
| STRING | XP_009792716.1 | 1e-121 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5206 | 13 | 15 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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