PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g60490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 499aa    MW: 55290.1 Da    PI: 6.6183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g60490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.4e-28233293159
                 ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kgs+ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  CA00g60490 233 MNDGCQWRKYGQKIAKGSPnCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 293
                 58***************9736*********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-31218295IPR003657WRKY domain
SuperFamilySSF1182901.96E-25226295IPR003657WRKY domain
PROSITE profilePS5081126.911228295IPR003657WRKY domain
SMARTSM007742.3E-35233294IPR003657WRKY domain
PfamPF031069.2E-26234293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MENNNKSESD NEMEIDLRLK LDAREEENEE NKIGEPSQLT EKTQAKDQEI PKNDQELSML  60
EKEMKRMKEE NKVLRMAVEQ TMKDYYDLQA KFSAIHQNNH KDHKNFLSLS GNDDSTTSEG  120
LTTRVPKILD IINTTNRTSS PTSHEDDTMD GDQLGLSLTL VSSNSTTSSK LLEMLEEDQR  180
KEKKEDHPTI THQIQNNKSQ NLGGLTSHHV TTASPPNRKS RVSVRARCES ATMNDGCQWR  240
KYGQKIAKGS PNCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA  300
MASTASAAAS FMLVDSSISP LLNNPNSSLN QPLNFPNYHH NLAPNYHHNI PNSSSSSSLI  360
PYNLSMIRNN ILNSSDPNSQ GNIVLDLTKN ISNNHQFPFA SSSSNSHEMG HSNWMPKLPN  420
YEGNSLLAGP KLQGEHHYSH NNNNIPPTLA HDENMSAIAA DPKFRVAVAA AISSLINKDQ  480
SHSTGESNGG SINRHTDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20220297176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-107HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582298.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F02e-71WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2G2XXX30.0A0A2G2XXX3_CAPAN; Uncharacterized protein
STRINGSolyc01g104550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-58WRKY DNA-binding protein 9