PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g58500
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 706aa    MW: 78625 Da    PI: 7.9073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g58500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-06118142526
                 --SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                 +C+  a++G    C+y d+C+F+H+
  CA00g58500 118 ICPEVAKSGkvsACPYNDKCRFSHD 142
                 599999999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.822118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.629157182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.702.1E-71349592IPR013785Aldolase-type TIM barrel
SuperFamilySSF513953.44E-61353666No hitNo description
CDDcd028013.68E-89353588No hitNo description
PfamPF012071.7E-50356623IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360437455IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MAEWSKAPDS SSGLRKRARR RRRIRXENPL QPPSSTTDDG GVTQEFRTAE ELVAKAIAPV  60
KREYLRPPPS RSSNYNNTVG VENDDVVEAK SAPIIKDKKS KRQMKRERRQ ELKSPLHICP  120
EVAKSGKVSA CPYNDKCRFS HDVEAFKAER PADIEGSCPF LIYEGPCPYG LACRFAGTHR  180
DDVSAPTENL PVKSSELNFF NKDTQKLLWK NKMKFPETES TLKLLGLKGN PKDKTLGGKG  240
ENGQVVPKEP ATDTKTDNNE VANDSIIPFI SPEDDADENN LADDTRPLKK AKSSVNEICS  300
SQVSSGCSSV QEGILDSSCD VNKLEPAADT VTDSDKSLKL HPREKKLIDF RDKLYLAPLT  360
TVGNLPFRRV CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHSSENLFG VQICGAYPDT  420
VTKTVELIEQ ECSVDFIDIN MGCPIDIVVN KGAGSALLTK PMRMKSVVEA ASLTVGTPVT  480
IKVRTAYFEG KNRIDSLIAD MGNWGATAVT IHGRSRQQRY SKLADWDYIY QCVCKAPKSL  540
QVLGNGDVFS YVDWNKHKTE CPELSTCMIA RGALVKPWIF TEIKEQRHWD ITSGERLDIL  600
KDYARFGLEH WGSDSKGVET TRHFLLEWLS YTCRYVPVGL LDVIPQRINW RPPSYYGRDD  660
LETLMASDSA ADWVRISEML LGKVPSGFSF APKHKSNAYD RAENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A2e-2535059727266tRNA-dihydrouridine synthase B
6ei9_B2e-2535059727266tRNA-dihydrouridine synthase B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11424RKRARRRRRIR
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992530.0KM399253.1 Solanum tuberosum FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539859.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A1U8E7Q40.0A0A1U8E7Q4_CAPAN; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGPGSC0003DMT4000041760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]