PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g58390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 367aa MW: 40883.1 Da PI: 7.4091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g58390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.1e-10	280	327	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq CA00g58390 280 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 327 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.35E-10	274	331	No hit	No description
SuperFamily	SSF47459	1.7E-17	274	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-17	276	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-7	280	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNDDNTTIVS SYEQLQNCFF NPNLDLDNSN NNNSDPFESA LSSMVSSPIA SIPNNNNNSN 60 SNSSHGGDNF VLRELIGRLG SICNSREMSP NSHNMYNNKN NYNNSSTNNS CYSTPLNSPP 120 KLNLSMMGNL PPTQFTTDPG FVERAARFSC FATNLESGQL SRVSSNQEFK DVNLLQRNSD 180 QFGDNSRENS SVSEQIPSGE IGSRKRKSIS KGKSTKIANE KNESNAKRSK SEENDNNNNN 240 NKAKEEEKAV VEENKDNQKP PEPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKLLQ 300 DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA LLSKDVSQLN 360 SVARIL*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNDDNTTIVS SYEQLQNCFF NPNLDLDNSN NNNSDPFESA LSSMVSSPIA SIPNNNNNSN  60
SNSSHGGDNF VLRELIGRLG SICNSREMSP NSHNMYNNKN NYNNSSTNNS CYSTPLNSPP  120
KLNLSMMGNL PPTQFTTDPG FVERAARFSC FATNLESGQL SRVSSNQEFK DVNLLQRNSD  180
QFGDNSRENS SVSEQIPSGE IGSRKRKSIS KGKSTKIANE KNESNAKRSK SEENDNNNNN  240
NKAKEEEKAV VEENKDNQKP PEPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKLLQ  300
DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA LLSKDVSQLN  360
SVARIL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	SRKRKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566236.1	0.0	PREDICTED: transcription factor bHLH78-like isoform X1
Refseq	XP_016566237.1	0.0	PREDICTED: transcription factor bHLH78-like isoform X2
Swissprot	Q9SRT2	7e-84	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2G2YQN6	0.0	A0A2G2YQN6_CAPAN; Transcription factor bHLH77
STRING	PGSC0003DMT400042791	1e-167	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]