 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CA00g52080 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 187aa MW: 21932.8 Da PI: 10.4899 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA00g52080 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.6 | 0.00021 | 99 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
y+C+ Cg+ ++++ +LkrH + H
CA00g52080 99 YVCSVCGRKCKTHLDLKRHFKQlH 122
9******************98777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MPRCPTREAG IQDIHYKIKP KKVVILWDLD NKPPRGTSYE AAMSLKKVAQ CFGEVVDMSA 60
YANRHAFIHL PRWVVEQRHE RRHLGILERK GVVTPSEPYV CSVCGRKCKT HLDLKRHFKQ 120
LHERERGKKL CRMRSLKGRK RQRFEERFVD GNYKYRDSML ASILYCPRFK CLVLSVRGCW 180
SPTSMD*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215450 | 1e-137 | AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence. |
| GenBank | HG975514 | 1e-137 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
