PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g50480

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 377aa MW: 44349.7 Da PI: 9.0876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g50480	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	8.9e-18	15	104	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y+eYA++ F vrk+k ++ + + i +++fvC+++g++ee+ +k++k++ ++ tr + a++ k+++ ++ ++v++++ eHnHe+a CA00g50480 15 LYCEYAHSKDFGVRKDKLYYFQGSSVIRQKRFVCYRHGEKEERPRKSNKASFNHIDTRSNYPAMISFKRQTpNNPFMVDRFVMEHNHEMA 104 6*******************************************9***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-14	15	104	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-31	211	305	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MKNEIVKDEE EAYTLYCEYA HSKDFGVRKD KLYYFQGSSV IRQKRFVCYR HGEKEERPRK 60 SNKASFNHID TRSNYPAMIS FKRQTPNNPF MVDRFVMEHN HEMASPKKRH LLRSARSITK 120 TKKLVIENTI NAGIKPIATY SYLVEETGRD DVLGYSKKDC FNFIHQLMKS KVEAEDAQSV 180 VNEFNNRQRM ILFFIGMDNR SRIDYDIFGD VVSFDTTYRT NKYHMICAPF IEINHHWQNI 240 IFGCAFLSDE SAKSFKWLFS TFLKSMGGIS PQTIITDQAQ GMTIGIREVM LETRHRLCQW 300 HISQNAPSHL GSLKNDKIFY KFFNKCMSDC DSIIEFEETW QMMLDHKWLK NLYNIRHMWS 360 TTFNNDVFNA GLKVTS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MKNEIVKDEE EAYTLYCEYA HSKDFGVRKD KLYYFQGSSV IRQKRFVCYR HGEKEERPRK  60
SNKASFNHID TRSNYPAMIS FKRQTPNNPF MVDRFVMEHN HEMASPKKRH LLRSARSITK  120
TKKLVIENTI NAGIKPIATY SYLVEETGRD DVLGYSKKDC FNFIHQLMKS KVEAEDAQSV  180
VNEFNNRQRM ILFFIGMDNR SRIDYDIFGD VVSFDTTYRT NKYHMICAPF IEINHHWQNI  240
IFGCAFLSDE SAKSFKWLFS TFLKSMGGIS PQTIITDQAQ GMTIGIREVM LETRHRLCQW  300
HISQNAPSHL GSLKNDKIFY KFFNKCMSDC DSIIEFEETW QMMLDHKWLK NLYNIRHMWS  360
TTFNNDVFNA GLKVTS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615095.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G2XYW3	0.0	A0A2G2XYW3_CAPAN; Uncharacterized protein
STRING	XP_009615095.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13574	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-58	FAR1-related sequence 5