PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g44680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 417aa    MW: 46344.1 Da    PI: 9.7653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g44680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  CA00g44680 60 FICEICNKGFQRDQNLQLHRRGH 82
                89*******************88 PP
2zf-C2H214.20.00012137159123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  CA00g44680 137 WKCEKCSKKYAVQSDWKAHTKTC 159
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.1E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.8E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456082IPR007087Zinc finger, C2H2
SMARTSM003550.0226082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355130102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.73E-7132157No hitNo description
SMARTSM00355130137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSGDLFSIH QQQVVEVPNP NNSKANSSSS KKRRNLPGTP DPDAEVIALS PKTLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKQEIVKKK VYICPEKACV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKTCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ESARITSVGT TTNTLNFNHH QQQQQQPNLP IGISQISTTF SQDFTTSNNN  240
CLHQKPRLSH WLNQSNTNLF SSNSAGLILP DHHHHMVQIP SPNMFNNTSS INAPMSSAPM  300
SATALLQKAA QIGSTKSTTT NCNFSNTFGV MNSSSSSSPS SNNVTQIFNS NTNNNVLLNG  360
CPDMHPQNIH FNLDNSLTRD FLGMGNEGGQ PFLPQELVKF ASMNSAMGLS HYTNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36133198368Zinc finger protein JACKDAW
5b3h_F1e-36133198368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-164HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542707.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotQ700D21e-131IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A2G2XZN60.0A0A2G2XZN6_CAPAN; Zinc finger protein JACKDAW
STRINGPGSC0003DMT4000043900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.15e-98C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Hirano Y, et al.
    Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
    Nat Plants, 2017. 3: p. 17010
    [PMID:28211915]
  3. Kobayashi A,Miura S,Kozaki A
    INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
    Plant Mol. Biol., 2017. 94(1-2): p. 1-13
    [PMID:28324206]
  4. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]
  5. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]