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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g41390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 27058.8 Da PI: 8.4026 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.6e-16 | 130 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f+++h k + +tl de+g + e k+ k++ l++GW++F+ +++L +gD +vF+l+ ++f +v ++r CA00g41390 130 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYVTLIDENGDEAETKYLALKTG----LSGGWRGFAIDHELVDGDALVFQLIAPTRF--KVYIIR 219 89************************433..3347***************666666....************************987777..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-20 | 121 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.18E-26 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 11.73 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 130 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-21 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVESKKKMLT YEESRLKRLE ENKKRMEELN LTKLAQAVRS ATSPKPSPMK KVKPRVRQEV 60 DLSSVRRSNR VADKPAPNYR EAVIEPLGRP RSYRRRDLLN RVYAADEDRQ YAIERAEQLQ 120 SEFDADFPSF VKPMLQSHVT GGFWLGLPVH FCKTHLPKHD EYVTLIDENG DEAETKYLAL 180 KTGLSGGWRG FAIDHELVDG DALVFQLIAP TRFKVYIIRV NQAEDEETEG VDNVI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 5e-75 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016539590.1 | 1e-175 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q1G3M3 | 5e-88 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1U8E8F3 | 1e-173 | A0A1U8E8F3_CAPAN; B3 domain-containing protein | ||||
TrEMBL | A0A2G2Y050 | 1e-173 | A0A2G2Y050_CAPAN; B3 domain-containing protein At3g19184-like | ||||
STRING | XP_009612757.1 | 1e-148 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-86 | B3 family protein |
Publications ? help Back to Top | |||
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