PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA00g41340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22697.1 Da PI: 8.933 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.8 | 6e-18 | 20 | 69 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n r+vtfskRr g++KK +EL++L++a++ v++ s ++++++++ CA00g41340 20 KPIDNRNSRHVTFSKRRLGLFKKTSELCILTGAKIVVLVQSlKRQRVFTF 69 68*************************************99556777777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.259 | 12 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.6E-22 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-19 | 13 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-17 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MNVNTNTVKK TQGRRKIAIK PIDNRNSRHV TFSKRRLGLF KKTSELCILT GAKIVVLVQS 60 LKRQRVFTFG HPSADAVIDL YLTGKSSSSS LLSSLSIDEF NLQRNNHYYS EMCKDLEEEK 120 KKKKEENIEE EKLVNIDSNN SDNNVGCWWY EPIDTKGIDE LEEFMVALEK WKKNLYFLFF 180 VHEVVVCVFL GGSKCY* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582025.1 | 1e-134 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G2Y044 | 1e-142 | A0A2G2Y044_CAPAN; MADS-box transcription factor 23 | ||||
STRING | Solyc01g106700.2.1 | 8e-74 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-23 | AGAMOUS-like 62 |