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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g25500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | DBB | ||||||||
Protein Properties | Length: 278aa MW: 30421.5 Da PI: 4.3041 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ CA00g25500 4 TCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 26.1 | 1.7e-08 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++++++++ C + ++ lC++C H + H++ CA00g25500 46 LVCERCNSQPAIFRCVEERVSLCQNCDWMAHASsstgstHRR 87 68************************9999966777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.271 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.24E-6 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.973 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.2E-6 | 46 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.73E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.34 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC 60 VEERVSLCQN CDWMAHASSS TGSTHRRQAL SCYTGCPSAA ELSTIWSFLL EDPSVGDSTC 120 EQGMGSMSIT DCRPGDSKHS QVKDKSQDMS SALDEVNDLH NLVKSAPLVG SSMPNLDNDL 180 PNVEPPVGST NLTWSKVSNS GTKGSNLFDD DPFHDDFNMD EVDLSIENYE ELFGVSLDNR 240 DHLFKNEDID DLFGTKDMSV AESSFQGVNA VEVVHTL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580425.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_016580426.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_016580427.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_016580428.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 4e-73 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2G2Z1U4 | 0.0 | A0A2G2Z1U4_CAPAN; Putative zinc finger protein CONSTANS-LIKE 11 | ||||
STRING | PGSC0003DMT400044878 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 9e-71 | B-box type zinc finger protein with CCT domain |