PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CA00g06870

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 670aa MW: 73166.4 Da PI: 6.686

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g06870	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	374	411	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + CA00g06870 374 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 411 554459******************************88 PP
2	BELL	110.5	9.8e-36	238	309	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+ y++q+qtvi e++ag+gsak Yt+lAl++iS++FrcLkdai++qi CA00g06870 238 ERQEIQMKKAKLVNMLDEVEQRYRLYHHQMQTVIHWLEQAAGIGSAKTYTALALQTISKQFRCLKDAIIGQI 309 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-50	150	307	IPR006563	POX domain
Pfam	PF07526	1.1E-45	157	305	IPR006563	POX domain
PROSITE profile	PS50071	12.147	352	415	IPR001356	Homeobox domain
CDD	cd00086	7.45E-13	355	416	No hit	No description
SMART	SM00389	9.7E-10	355	419	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	356	421	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	358	421	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	372	411	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MASYFHGNSE IQTGNDGLQT LILMNPGYVG FSETQHHQQQ QQQQGFVGIP LTTAAFAAPS 60 SSSQEGGNSN NDSISALHGF LARSTQYGFY NPSNDITAAR DITRAHQQGL SLSLSSQQPG 120 FGNFNAAREI VSPTAGGGSA SSGILQQPGS SSSSVPLSSK YLKAAQELLD EVVNVGKSMK 180 STSTNSTEVV NDDVKKLKNT TMTTTTTTTD VDGQVDGGES NSKHDGVAVA GTELSTAERQ 240 EIQMKKAKLV NMLDEVEQRY RLYHHQMQTV IHWLEQAAGI GSAKTYTALA LQTISKQFRC 300 LKDAIIGQIR SASKTLGEED SLGTKIEGSR LKFVDNQLRQ QRALQQLGMI QHNAWRPQRG 360 LPERAVSVLR AWLFEHFLHP YPKDSDKMML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM 420 YLEEVKEHEQ NGTDQEKTNK LGEQNDDSTT SRSIAQQQKS PGSDVSKQHN STSKMSMSNA 480 TSISPIGMSI RNQSAAGFNL IGSPEIESID ITQGSSPKKL RSNNDMLHSP NMDVKPDEDQ 540 MTMKFGDDRQ DRDGFSLMGG PMNFMGGFGA YPIGEISRFS TEQFSAPYSA SGAVSLTLGL 600 PHNENLPMSA THHSFLPIPT QNIQIGEANH EFGSLNTPTS AHSTSSVYEN FNIQNRKRFA 660 APLLPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MASYFHGNSE IQTGNDGLQT LILMNPGYVG FSETQHHQQQ QQQQGFVGIP LTTAAFAAPS  60
SSSQEGGNSN NDSISALHGF LARSTQYGFY NPSNDITAAR DITRAHQQGL SLSLSSQQPG  120
FGNFNAAREI VSPTAGGGSA SSGILQQPGS SSSSVPLSSK YLKAAQELLD EVVNVGKSMK  180
STSTNSTEVV NDDVKKLKNT TMTTTTTTTD VDGQVDGGES NSKHDGVAVA GTELSTAERQ  240
EIQMKKAKLV NMLDEVEQRY RLYHHQMQTV IHWLEQAAGI GSAKTYTALA LQTISKQFRC  300
LKDAIIGQIR SASKTLGEED SLGTKIEGSR LKFVDNQLRQ QRALQQLGMI QHNAWRPQRG  360
LPERAVSVLR AWLFEHFLHP YPKDSDKMML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM  420
YLEEVKEHEQ NGTDQEKTNK LGEQNDDSTT SRSIAQQQKS PGSDVSKQHN STSKMSMSNA  480
TSISPIGMSI RNQSAAGFNL IGSPEIESID ITQGSSPKKL RSNNDMLHSP NMDVKPDEDQ  540
MTMKFGDDRQ DRDGFSLMGG PMNFMGGFGA YPIGEISRFS TEQFSAPYSA SGAVSLTLGL  600
PHNENLPMSA THHSFLPIPT QNIQIGEANH EFGSLNTPTS AHSTSSVYEN FNIQNRKRFA  660
APLLPDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	361	419	5	63	Homeobox protein Meis2
3k2a_B	2e-16	361	419	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU686385	0.0	EU686385.1 Solanum etuberosum BEL29 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546190.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-151	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2G3AMP4	0.0	A0A2G3AMP4_CAPAN; BEL1-like homeodomain protein 10
STRING	PGSC0003DMT400054945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-118	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]