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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g06730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 103aa MW: 12134 Da PI: 6.7922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.2e-14 | 12 | 82 | 19 | 99 |
-HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 19 pkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 p f+ ++ g +++ ++ + g++W vkl ++++ +++GW++F+++++L+ gD+++F+++g+++f v++f++ CA00g06730 12 PIGFL-KYlkG-H--DHVEHVVLKRAGKKWLVKL--NGRR----FKDGWEKFAEEHDLQLGDMLIFRHEGDMDF--DVSIFDS 82 55566.44332.2..4567788999*********..8887....9*****************************..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.153 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-6 | 2 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-17 | 10 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.50E-13 | 11 | 81 | No hit | No description |
Pfam | PF02362 | 3.0E-11 | 11 | 82 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-17 | 21 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MYHSCYVLQK VPIGFLKYLK GHDHVEHVVL KRAGKKWLVK LNGRRFKDGW EKFAEEHDLQ 60 LGDMLIFRHE GDMDFDVSIF DSTRCDTEYA EYLQEKKIGE LL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563098.1 | 6e-68 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A1U8G345 | 1e-66 | A0A1U8G345_CAPAN; B3 domain-containing protein REM10-like | ||||
STRING | XP_009801950.1 | 6e-44 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-17 | B3 family protein |