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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 27544.3 Da PI: 9.0717 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 104 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs +dp+v++ tYegeHnh+ CA00g00230 104 VKDGYNWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQRSVKDPSVLVATYEGEHNHP 163 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-30 | 95 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.001 | 99 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 100 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-33 | 104 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-25 | 105 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLEEELKRMK EENKKLATML TTLGENYNSL RTNLIELQQK HSTHEEDNNS KLLSRKRKAE 60 DVCCVNNSDI NFEEASPKRP REIITTSIST VSVKTTLSDQ TSLVKDGYNW RKYGQKVTRD 120 NPSPRAYYKC SFAPTCPVKK KVQRSVKDPS VLVATYEGEH NHPHPSQAET TAPLVNQGVI 180 TNPTFFNKFM EDINTSSLQK DLVAKMVPSL SKNPSFAATV AQPSLEYFLE YDLQLLKWVL 240 RG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 87 | 166 | 2 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 87 | 166 | 2 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549886.1 | 1e-180 | PREDICTED: probable WRKY transcription factor 40 isoform X1 | ||||
Swissprot | Q9SAH7 | 1e-55 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8EU20 | 1e-179 | A0A1U8EU20_CAPAN; probable WRKY transcription factor 40 isoform X1 | ||||
STRING | XP_009610348.1 | 1e-120 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-47 | WRKY DNA-binding protein 40 |