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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g00130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 265aa MW: 30117.9 Da PI: 6.6717 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.1e-31 | 132 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+ CA00g00130 132 VKDGYNWRKYGQKVTRDNPYPRAYYKCSFApTCPVKKKVQRSIEDPSILVAVYEGEHNHP 191 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-30 | 125 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.623 | 127 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 129 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-35 | 132 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-25 | 133 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDTNLGDKTF SIDLNTNPSL HNTSRSPHDT LDEKLVRMRE ENKKLVTMLT TLCENYNSLH 60 SHLIELLQKY FSHNEEDNFK FFLRKRKAEG ECCENNSDIH FEEASPKRPR EITTNVSTVC 120 VKTNPSDQTS LVKDGYNWRK YGQKVTRDNP YPRAYYKCSF APTCPVKKKV QRSIEDPSIL 180 VAVYEGEHNH PHPSQAEITV PLLNQGVTTD PTFLNKLMEE IDTNSLQQHL VEQMASSLTS 240 SPSFTAAVAA AISGKIFEYD LPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 126 | 194 | 11 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 126 | 194 | 11 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582147.1 | 0.0 | PREDICTED: WRKY transcription factor 18-like | ||||
Swissprot | Q9SAH7 | 2e-59 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8HFF4 | 0.0 | A0A1U8HFF4_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YXD0 | 0.0 | A0A2G2YXD0_CAPAN; WRKY transcription factor 18-like | ||||
STRING | PGSC0003DMT400019058 | 1e-167 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-62 | WRKY DNA-binding protein 40 |