PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g00040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 355aa    MW: 39029.6 Da    PI: 10.2603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g00040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-0686108123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F r  nL+ H r H
  CA00g00040  86 FVCEICNKGFQRDQNLQLHRRGH 108
                 89*******************88 PP
2zf-C2H213.10.00029162184123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H + +
  CA00g00040 162 WKCEKCSKRYAVQSDWKAHSKIC 184
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-685108No hitNo description
PfamPF121715.2E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94986108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-6157182No hitNo description
SMARTSM00355130162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIKGMLGDDS MSNLTSASND ASISSSNYRT EIGSVRYPQQ SLVAPAQIQT QPAAANKKKR  60
NLPGNPDPEA EVVALSPRSL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK  120
EVKKKVYVCP EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAEESSRT IIPPPNPLLG SASSTSHHLN  240
LHALQNFQLK QEQQQQSNFN LVSHPSNDLS FQLFVQNPNN SSSNIFGGVA SAHMSATTLL  300
QKAAQIGVTS SAAANNMSTT SFFSPTTTSS TTTTGMVAAA AXXXXXXSSR RGRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35158219364Zinc finger protein JACKDAW
5b3h_F1e-35158219364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4577651e-145CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBankHG9755201e-145HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537813.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-121IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2G2YXD30.0A0A2G2YXD3_CAPAN; Zinc finger protein NUTCRACKER
STRINGXP_009793158.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]