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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_47721 | ||||||||
Common Name | KK1_045624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 76462.1 Da PI: 7.5224 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.5 | 3.5e-25 | 139 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++ C.cajan_47721 139 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDG 231 99****************************963.3445679************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+++++r+ C.cajan_47721 232 ELRLGIRRA 240 9*****996 PP | |||||||
2 | Auxin_resp | 118.3 | 6.1e-39 | 265 | 346 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+++F++ YnPr+s+seF+++++k++k+l+ ++svGmRf+m+feted +err++G++vg++d+dpvrWp+SkWr+L C.cajan_47721 265 VVNALSTRCAFTIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDTAERRFTGLIVGITDVDPVRWPGSKWRCL 346 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 133 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-42 | 133 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.48E-23 | 137 | 239 | No hit | No description |
Pfam | PF02362 | 3.2E-23 | 139 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-23 | 139 | 241 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.1E-34 | 266 | 346 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MAAFIDLNSA TEDDETPSSA SASASASSSV CLELWHACAG PMISLPKKGS LVVYFPQGHV 60 EQFRHFSLPV SANIPSHVFC RVLHVNLNAE EGSDEVYCQV VLVPETEQVQ QKLREEGMNA 120 AGEEEDAEAG MKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV 180 AKDLHGQEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED GELRLGIRRA 240 AQLKSGITFS SLPCQQLNLG SLVEVVNALS TRCAFTIHYN PRVSSSEFII PIHKFLKSLD 300 YSYSVGMRFR MRFETEDTAE RRFTGLIVGI TDVDPVRWPG SKWRCLMVRW DDLEAARYNR 360 VSPWEIEPFG SASTANNLMS AGLKRTKIGL PSAKLEFPVP NAIGTSDFGE SLRFQKVLQG 420 QEILGVNTTF DSINAQSHQL SDLRRCYPGS ICSRIAATGN SIGIPQVSSN VSCNGIGFGE 480 SFRFQKVLQG QEILPSQPYG RRALSVDEAC GNGRFGLFDG YQALRSRNGW SSHMSNKSSH 540 LHSPVPSGQV SSPSSVLKFQ QAVNPVSNSD YINKVSQVME AQEGTNCFGL PSFHNQLDSS 600 HSHDSISVLR TSQELVPSCK SRCRVFGFSL TEAIANKEAI DPSAVTCSGP SFTRHVEDDF 660 PPGHSLRSKA VGSYCTKVSS NLYPPRDMVF DKVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-118 | 18 | 373 | 7 | 359 | Auxin response factor 1 |
4ldw_A | 1e-118 | 18 | 373 | 7 | 359 | Auxin response factor 1 |
4ldw_B | 1e-118 | 18 | 373 | 7 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_47721 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126023.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A151QTB7 | 0.0 | A0A151QTB7_CAJCA; Auxin response factor | ||||
STRING | GLYMA07G32300.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |