PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47365
Common NameKK1_049720
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 567aa    MW: 63345.8 Da    PI: 6.0661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47365genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.71.2e-1281975661373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+a++++++   ++lLa+ ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lkf+++
  C.cajan_47365 197 LKQLLISCARALAENSMDDFDQLLAKARDAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALRCREPE---GDELLSYMQLLFEICPYLKFGYM 289
                    689******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   l  +g+rLa + e++g+++ef+  v     d++
  C.cajan_47365 290 AANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGGGLDIVGKRLALMSEKFGIQVEFHG-VPVFAPDVT 384
                    ******************************************************99999999************************.688899*** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+++pgEalaVn++lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++Fl rf+e+l+yy a+f+s++++l+r+s++ri+vE
  C.cajan_47365 385 REMLDIRPGEALAVNFSLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFLLRFIETLDYYLAIFESIDVTLSRDSKDRINVE 480
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++l+r+ivn++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  C.cajan_47365 481 QHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFTQCPLSSYVNSVIRSLLRCYS-EHYTLMEKDGAMLLGWKSRNLISASAW 566
                    *******************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.233171548IPR005202Transcription factor GRAS
PfamPF035144.3E-126197566IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDSQQLFSFG VTSAELPYMS SFPTVPSLPN RLLGPLKYDT GNSPNSPFST HFDSDTLSAL  60
SDSQEQYSPG EILSSVTPFC NSLLETNHYM HRSISLLQNA SCNQKIKHAL LELETALMAP  120
DDDEFTTSKA LAETTSRPMA SGQRDRSWSH ENHGSQYTQN QPSYVTGNRQ SSEVVRVEKR  180
QKLMEEPSLQ AFPPNNLKQL LISCARALAE NSMDDFDQLL AKARDAVSIN GEPIQRLGAY  240
MVEGLVARKE ASGNSIYHAL RCREPEGDEL LSYMQLLFEI CPYLKFGYMA ANGAIAEACR  300
NEDRIHIIDF QIAQGSQWMT LLQALAARPG GAPHVRITGI DDPVSKYARG GGLDIVGKRL  360
ALMSEKFGIQ VEFHGVPVFA PDVTREMLDI RPGEALAVNF SLQLHHTADE SVHVSNPRDG  420
LLRLVKSLSP KVTTLVEQES NTNTTPFLLR FIETLDYYLA IFESIDVTLS RDSKDRINVE  480
QHCLARDIVN IIACEGKERV ERHELFGKWK SRLTMAGFTQ CPLSSYVNSV IRSLLRCYSE  540
HYTLMEKDGA MLLGWKSRNL ISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-631995676375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47365
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209526.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A151UEX00.0A0A151UEX0_CAJCA; Chitin-inducible gibberellin-responsive protein 1
STRINGGLYMA13G36120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-174GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]